RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 WRBO00258 174 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 NDUFB6O95139 128 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 CFDP00746 253 aaPredicted RBP11.74□□□□□ -0.53
COL9A3-208ENST00000469802 DEFB1P60022 68 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 RPP30P78346 268 aaKnown RBP11.74□□□□□ -0.53
COL9A3-208ENST00000469802 PRR20EP86478 221 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 PRR20CP86479 221 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 PRR20DP86480 221 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 PRR20BP86481 221 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 PRR20AP86496 221 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 BAK1Q16611 211 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 ZNF709Q8N972 641 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 PAIP2BQ9ULR5 123 aaKnown RBP11.74□□□□□ -0.53
COL9A3-208ENST00000469802 SLC45A2Q9UMX9 530 aa11.74□□□□□ -0.53
COL9A3-208ENST00000469802 TRAV10A0A0B4J240 114 aa11.73□□□□□ -0.53
COL9A3-208ENST00000469802 C9orf170A2RU37 121 aa11.73□□□□□ -0.53
COL9A3-208ENST00000469802 NAP1L6A6NFF2 107 aa11.73□□□□□ -0.53
COL9A3-208ENST00000469802 ZNF705FA8MVS1 300 aaPredicted RBP11.73□□□□□ -0.53
COL9A3-208ENST00000469802 ISLRO14498 428 aa11.73□□□□□ -0.53
COL9A3-208ENST00000469802 ZNF705DP0CH99 300 aaPredicted RBP11.73□□□□□ -0.53
COL9A3-208ENST00000469802 ZNF705BP0CI00 300 aaPredicted RBP11.73□□□□□ -0.53
COL9A3-208ENST00000469802 ID1P41134 155 aa11.73□□□□□ -0.53
COL9A3-208ENST00000469802 PAX9P55771 341 aa11.73□□□□□ -0.53
COL9A3-208ENST00000469802 C17orf77Q96MU5 243 aa11.73□□□□□ -0.53
COL9A3-208ENST00000469802 NEU1Q99519 415 aa11.73□□□□□ -0.53
COL9A3-208ENST00000469802 SDHCQ99643 169 aaPredicted RBP11.73□□□□□ -0.53
COL9A3-208ENST00000469802 IGLL5B9A064 214 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 H3BP45 60 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 ADAP1O75689 374 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 BTCP35070 178 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 ID3Q02535 119 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 SPANXN5Q5MJ07 72 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 SAMD13Q5VXD3 122 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 ACOT7LQ6ZUV0 252 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 OR8I2Q8N0Y5 310 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 LINC00052Q96N35 136 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 SLC25A32Q9H2D1 315 aa11.72□□□□□ -0.53
COL9A3-208ENST00000469802 HECTD4Q9Y4D8 3996 aa11.71□□□□□ -0.53
COL9A3-208ENST00000469802 C12orf74Q32Q52 190 aa11.71□□□□□ -0.53
COL9A3-208ENST00000469802 SPATA31B1PQ5VZV4 182 aa11.71□□□□□ -0.53
COL9A3-208ENST00000469802 TRIQKQ629K1 86 aa11.71□□□□□ -0.53
COL9A3-208ENST00000469802 TMEM182Q6ZP80 229 aaPredicted RBP11.71□□□□□ -0.53
COL9A3-208ENST00000469802 OR4D5Q8NGN0 318 aa11.71□□□□□ -0.53
COL9A3-208ENST00000469802 COQ8AQ8NI60 647 aa11.71□□□□□ -0.53
COL9A3-208ENST00000469802 PPP1R14BQ96C90 147 aa11.71□□□□□ -0.53
COL9A3-208ENST00000469802 FLVCR2Q9UPI3 526 aa11.71□□□□□ -0.53
COL9A3-208ENST00000469802 STRAPQ9Y3F4 350 aaKnown RBP11.71□□□□□ -0.53
COL9A3-208ENST00000469802 IGHV4-4A0A075B6R2 117 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 ZNF98A6NK75 572 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 PMS2P5A8MQ11 134 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 A8MTW9 85 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 AMBPP02760 352 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 MEOX2P50222 304 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 POLR2GP62487 172 aaKnown RBP eCLIP11.7□□□□□ -0.54
COL9A3-208ENST00000469802 AKR1C1Q04828 323 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 GSG1LQ6UXU4 331 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 TMEM144Q7Z5S9 345 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 BPIFCQ8NFQ6 507 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 RNF126Q9BV68 326 aa11.7□□□□□ -0.54
COL9A3-208ENST00000469802 A0A0J9YX75 114 aa11.69□□□□□ -0.54
COL9A3-208ENST00000469802 SMIM9A6NGZ8 99 aa11.69□□□□□ -0.54
COL9A3-208ENST00000469802 IGKV3-20P01619 116 aa11.69□□□□□ -0.54
COL9A3-208ENST00000469802 OR4E1P0C645 316 aa11.69□□□□□ -0.54
COL9A3-208ENST00000469802 GATA2P23769 480 aaPredicted RBP11.69□□□□□ -0.54
COL9A3-208ENST00000469802 GALR1P47211 349 aa11.69□□□□□ -0.54
COL9A3-208ENST00000469802 C20orf173Q96LM9 149 aa11.69□□□□□ -0.54
COL9A3-208ENST00000469802 F6UB75 175 aa11.68□□□□□ -0.54
COL9A3-208ENST00000469802 INPP1P49441 399 aa11.68□□□□□ -0.54
COL9A3-208ENST00000469802 FXYD7P58549 80 aa11.68□□□□□ -0.54
COL9A3-208ENST00000469802 FAM78BQ5VT40 261 aa11.68□□□□□ -0.54
COL9A3-208ENST00000469802 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.68□□□□□ -0.54
COL9A3-208ENST00000469802 ZNF767PQ75MW2 155 aa11.68□□□□□ -0.54
COL9A3-208ENST00000469802 GPR82Q96P67 336 aa11.68□□□□□ -0.54
COL9A3-208ENST00000469802 C7orf50Q9BRJ6 194 aaKnown RBP11.68□□□□□ -0.54
COL9A3-208ENST00000469802 SLC35B3Q9H1N7 401 aa11.68□□□□□ -0.54
COL9A3-208ENST00000469802 SLC25A22Q9H936 323 aa11.68□□□□□ -0.54
COL9A3-208ENST00000469802 DEFB131BA0A096LNP1 70 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 H3BRN7 92 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 SSSCA1O60232 199 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 IL7P13232 177 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 ORM2P19652 201 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 ANXA7P20073 488 aaKnown RBP11.67□□□□□ -0.54
COL9A3-208ENST00000469802 PSG9Q00887 426 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 EBLN2Q6P2I7 272 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 AMTNQ6UX39 209 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 TMEM14EPQ6UXP3 125 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 OR4B1Q8NGF8 309 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 OR1B1Q8NGR6 318 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 SMIM8Q96KF7 97 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 TMEM147Q9BVK8 224 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 SCRT1Q9BWW7 348 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 RPRMQ9NS64 109 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 PSENENQ9NZ42 101 aa11.67□□□□□ -0.54
COL9A3-208ENST00000469802 TMEM189A5PLL7 270 aa11.66□□□□□ -0.54
COL9A3-208ENST00000469802 CCNKO75909 580 aa11.66□□□□□ -0.54
COL9A3-208ENST00000469802 IFNA21P01568 189 aa11.66□□□□□ -0.54
COL9A3-208ENST00000469802 PLP1P60201 277 aa11.66□□□□□ -0.54
COL9A3-208ENST00000469802 CYP2G1PQ6ZSU1 146 aa11.66□□□□□ -0.54
COL9A3-208ENST00000469802 C16orf92Q96LL3 132 aa11.66□□□□□ -0.54
COL9A3-208ENST00000469802 SHANK2-AS3Q9BTD1 123 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms