RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 VSIRQ9H7M9 311 aa4.83□□□□□ -1.64
SF3B1-206ENST00000462613 MLXQ9UH92 298 aa4.83□□□□□ -1.64
SF3B1-206ENST00000462613 WDR83OSQ9Y284 106 aa4.83□□□□□ -1.64
SF3B1-206ENST00000462613 SMAD5-AS1Q9Y6J3 95 aa4.83□□□□□ -1.64
SF3B1-206ENST00000462613 IGKV3-7A0A075B6H7 116 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 IGKV1OR2-108A0A075B7D4 117 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 TRAV2A0A0B4J234 112 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 IGHV3-66A0A0C4DH42 116 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 ARPC5O15511 151 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 RPL7P18124 248 aaKnown RBP4.82□□□□□ -1.64
SF3B1-206ENST00000462613 C4BPBP20851 252 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 RPL29P47914 159 aaKnown RBP4.82□□□□□ -1.64
SF3B1-206ENST00000462613 MEOX2P50222 304 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 PLP1P60201 277 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 OPCMLQ14982 345 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 USF2Q15853 346 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-206ENST00000462613 C10orf113Q5VZT2 155 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 SIGLEC15Q6ZMC9 328 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 Q6ZNX1 250 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 HAPLN4Q86UW8 402 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 STXBP6Q8NFX7 210 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 AQP10Q96PS8 301 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 RNF2Q99496 336 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 GGTLC1Q9BX51 225 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 NPCDR1Q9BY65 106 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 SMIM3Q9BZL3 60 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 WDR61Q9GZS3 305 aaKnown RBP4.82□□□□□ -1.64
SF3B1-206ENST00000462613 TUBA4BQ9H853 241 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 SLC25A22Q9H936 323 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 AURKAIP1Q9NWT8 199 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-206ENST00000462613 DOK5Q9P104 306 aa4.82□□□□□ -1.64
SF3B1-206ENST00000462613 LSM4Q9Y4Z0 139 aaKnown RBP4.82□□□□□ -1.64
SF3B1-206ENST00000462613 NOTCH1P46531 2555 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 hCG_2014768A0A024R1R8 64 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 KANTRA0A1W2PQU2 76 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 ZNF98A6NK75 572 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 ZNF785A8K8V0 405 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 OR11H12B2RN74 326 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 TAAR5O14804 337 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 BUB3O43684 328 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 ATF4P18848 351 aaPredicted RBP4.81□□□□□ -1.64
SF3B1-206ENST00000462613 EDN2P20800 178 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 GATA2P23769 480 aaPredicted RBP4.81□□□□□ -1.64
SF3B1-206ENST00000462613 ID1P41134 155 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 TFPI2P48307 235 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 KRTAP10-11P60412 298 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 SNRPD3P62318 126 aaKnown RBP4.81□□□□□ -1.64
SF3B1-206ENST00000462613 EIF5AP63241 154 aaKnown RBP4.81□□□□□ -1.64
SF3B1-206ENST00000462613 MIC13Q5XKP0 118 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 C16orf54Q6UWD8 224 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 ADAMTSL5Q6ZMM2 481 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 LINC00305Q7Z4B0 112 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 AKAP14Q86UN6 197 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 BPIFA4PQ86YQ2 179 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 WFDC3Q8IUB2 231 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 GATAD1Q8WUU5 269 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 CHAC2Q8WUX2 184 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 MGST2Q99735 147 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 NEURL2Q9BR09 285 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 PARD6GQ9BYG4 376 aaPredicted RBP4.81□□□□□ -1.64
SF3B1-206ENST00000462613 SLC25A39Q9BZJ4 359 aaPredicted RBP4.81□□□□□ -1.64
SF3B1-206ENST00000462613 MFFQ9GZY8 342 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 ARV1Q9H2C2 271 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 DNAJC4Q9NNZ3 241 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 SLC39A9Q9NUM3 307 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 PXMP4Q9Y6I8 212 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 U3KQE9 123 aa4.81□□□□□ -1.64
SF3B1-206ENST00000462613 NBEAL1Q6ZS30 2694 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 A0A0D9SG52 128 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 A0A1W2PPV4 95 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 IZUMO1RA6ND01 250 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 HMSDA8MTL9 139 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 H3BRN7 92 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 PFDN1O60925 122 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 JTBO76095 146 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 APOHP02749 345 aaPredicted RBP4.8□□□□□ -1.64
SF3B1-206ENST00000462613 PRB2P02812 416 aaPredicted RBP4.8□□□□□ -1.64
SF3B1-206ENST00000462613 TAS2R45P59539 299 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 ZNF345Q14585 488 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 ACOT6Q3I5F7 207 aaPredicted RBP4.8□□□□□ -1.64
SF3B1-206ENST00000462613 GBGT1Q8N5D6 347 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 LRRC20Q8TCA0 184 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 GLMPQ8WWB7 406 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 GNPNAT1Q96EK6 184 aaPredicted RBP4.8□□□□□ -1.64
SF3B1-206ENST00000462613 FAM110AQ9BQ89 295 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 SHANK2-AS3Q9BTD1 123 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 MRPL32Q9BYC8 188 aaKnown RBP4.8□□□□□ -1.64
SF3B1-206ENST00000462613 MS4A6AQ9H2W1 248 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 NRN1Q9NPD7 142 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 TNFSF18Q9UNG2 199 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 SELENOKQ9Y6D0 94 aa4.8□□□□□ -1.64
SF3B1-206ENST00000462613 MBP02144 154 aa4.79□□□□□ -1.64
SF3B1-206ENST00000462613 CD7P09564 240 aa4.79□□□□□ -1.64
SF3B1-206ENST00000462613 RHOBP62745 196 aa4.79□□□□□ -1.64
SF3B1-206ENST00000462613 SERF2P84101 59 aa4.79□□□□□ -1.64
SF3B1-206ENST00000462613 PRR20EP86478 221 aa4.79□□□□□ -1.64
SF3B1-206ENST00000462613 PRR20CP86479 221 aa4.79□□□□□ -1.64
SF3B1-206ENST00000462613 PRR20DP86480 221 aa4.79□□□□□ -1.64
SF3B1-206ENST00000462613 PRR20BP86481 221 aa4.79□□□□□ -1.64
SF3B1-206ENST00000462613 PRR20AP86496 221 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms