RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 WT1-ASQ06250 92 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 CDPF1Q6NVV7 123 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 GRAMD2BQ96HH9 432 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 IGHV3-66A0A0C4DH42 116 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 NBR2O15453 112 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 NPPCP23582 126 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 LOXP28300 417 aaPredicted RBP9.41□□□□□ -0.9
NPHP4-204ENST00000460696 OR8A1Q8NGG7 326 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 TMEM191AQ9H0A3 160 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 PRORYQ9H606 182 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 UFC1Q9Y3C8 167 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 AKAP13Q12802 2813 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 TNRC6AQ8NDV7 1962 aaKnown RBP9.41□□□□□ -0.9
NPHP4-204ENST00000460696 COL4A2P08572 1712 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 TANC2Q9HCD6 1990 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 C9JCJ5 164 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 LHBP01229 141 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 HBBP68871 147 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 OR5R1Q8NH85 324 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 KMT2EQ8IZD2 1858 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 DYSFO75923 2080 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 FRYQ5TBA9 3013 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 TRAV8-1A0A0A6YYK1 113 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 TMEM189A5PLL7 270 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 IZUMO1RA6ND01 250 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 ZNF207O43670 478 aaKnown RBP9.41□□□□□ -0.9
NPHP4-204ENST00000460696 LEPROTL1O95214 131 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 C22orf34Q6ZV56 151 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 EXOC3-AS1Q8N2X6 119 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 OR5AN1Q8NGI8 311 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 NRN1Q9NPD7 142 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 SIGLEC9Q9Y336 463 aa9.41□□□□□ -0.9
NPHP4-204ENST00000460696 KLF2Q9Y5W3 355 aaPredicted RBP9.41□□□□□ -0.9
NPHP4-204ENST00000460696 NUDT10Q8NFP7 164 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 NUDT11Q96G61 164 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 MAP1LC3CQ9BXW4 147 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 NDUFA4L2Q9NRX3 87 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 C21orf62Q9NYP8 219 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 GZMBP10144 247 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 Q8NA96 180 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 KIAA1549Q9HCM3 1950 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 TRAV9-1A0A075B6T8 112 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 CEACAM4O75871 244 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 RNF224P0DH78 156 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 TMEM155Q4W5P6 130 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 ZNF600Q6ZNG1 722 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 C11orf42Q8N5U0 333 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 OR4B1Q8NGF8 309 aa9.4□□□□□ -0.9
NPHP4-204ENST00000460696 RPP21Q9H633 154 aaKnown RBP9.4□□□□□ -0.9
NPHP4-204ENST00000460696 GGTLC3B5MD39 225 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 RPL7P18124 248 aaKnown RBP9.39□□□□□ -0.91
NPHP4-204ENST00000460696 TEX36Q5VZQ5 186 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 ARPC1AQ92747 370 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 FBXL7Q9UJT9 491 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 CDC42EP3Q9UKI2 254 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 TRAV30A0A087WSZ9 112 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 OR2T8A6NH00 312 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 BUB1B-PAK6H3BSN5 160 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 GPR183P32249 361 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 TGFAP01135 160 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 CTAG1AP78358 180 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 TWIST1Q15672 202 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 LY6EQ16553 131 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 VWC2Q2TAL6 325 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 ZNF833PQ6ZTB9 187 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 RNF125Q96EQ8 232 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 ASCL2Q99929 193 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 CTSZQ9UBR2 303 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 RABAC1Q9UI14 185 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 BMPR1BO00238 502 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 HLA-DRB1P01911 266 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 FCER1GP30273 86 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 RELQ04864 619 aaPredicted RBP9.39□□□□□ -0.91
NPHP4-204ENST00000460696 TNFRSF14Q92956 283 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 C14orf144Q96I85 54 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 NCOR1P1Q9H4R4 102 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 MAST4O15021 2626 aa9.39□□□□□ -0.91
NPHP4-204ENST00000460696 HINT1P49773 126 aaPredicted RBP9.38□□□□□ -0.91
NPHP4-204ENST00000460696 GUSBP1Q15486 140 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 C3orf36Q3SXR2 165 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 ZNF664Q8N3J9 261 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 NEU4Q8WWR8 484 aaPredicted RBP9.38□□□□□ -0.91
NPHP4-204ENST00000460696 GNB1LQ9BYB4 327 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 RPLP1P05386 114 aaKnown RBP9.38□□□□□ -0.91
NPHP4-204ENST00000460696 PRR20EP86478 221 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 PRR20CP86479 221 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 PRR20DP86480 221 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 PRR20BP86481 221 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 PRR20AP86496 221 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 C8orf46Q8TAG6 207 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 NDUFAF3Q9BU61 184 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 YAE1D1Q9NRH1 226 aa9.38□□□□□ -0.91
NPHP4-204ENST00000460696 FNDC4Q9H6D8 234 aaPredicted RBP9.38□□□□□ -0.91
NPHP4-204ENST00000460696 LSM4Q9Y4Z0 139 aaKnown RBP9.38□□□□□ -0.91
NPHP4-204ENST00000460696 BAHCC1Q9P281 2608 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 PRSS1P07477 247 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 SSBP2P81877 361 aaPredicted RBP9.37□□□□□ -0.91
NPHP4-204ENST00000460696 IGF2-ASQ6U949 168 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 CIARTQ8N365 385 aaPredicted RBP9.37□□□□□ -0.91
NPHP4-204ENST00000460696 IGFBPL1Q8WX77 278 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms