RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 C2orf50Q96LR7 162 aa13.6□□□□□ -0.23
HOXD3-204ENST00000459979 FBXL17Q9UF56 701 aa13.6□□□□□ -0.23
HOXD3-204ENST00000459979 PLECQ15149 4684 aaKnown RBP13.6□□□□□ -0.23
HOXD3-204ENST00000459979 METTL15P1P0C7V9 234 aa13.59□□□□□ -0.23
HOXD3-204ENST00000459979 AKR1C1Q04828 323 aa13.59□□□□□ -0.23
HOXD3-204ENST00000459979 DEFB135Q30KP9 77 aa13.59□□□□□ -0.23
HOXD3-204ENST00000459979 LEMD1Q68G75 181 aa13.59□□□□□ -0.23
HOXD3-204ENST00000459979 GGACTQ9BVM4 153 aa13.59□□□□□ -0.23
HOXD3-204ENST00000459979 C5orf51A6NDU8 294 aa13.58□□□□□ -0.24
HOXD3-204ENST00000459979 CCNKO75909 580 aa13.58□□□□□ -0.24
HOXD3-204ENST00000459979 ZNF688P0C7X2 276 aa13.58□□□□□ -0.24
HOXD3-204ENST00000459979 TMEM182Q6ZP80 229 aaPredicted RBP13.58□□□□□ -0.24
HOXD3-204ENST00000459979 BPIFCQ8NFQ6 507 aa13.58□□□□□ -0.24
HOXD3-204ENST00000459979 OR10P1Q8NGE3 313 aa13.58□□□□□ -0.24
HOXD3-204ENST00000459979 C11orf1Q9H5F2 150 aa13.58□□□□□ -0.24
HOXD3-204ENST00000459979 NPVFQ9HCQ7 196 aa13.58□□□□□ -0.24
HOXD3-204ENST00000459979 FAM25EA8MYX2 175 aa13.57□□□□□ -0.24
HOXD3-204ENST00000459979 K7EPK0 472 aa13.57□□□□□ -0.24
HOXD3-204ENST00000459979 SELENOTP62341 195 aa13.57□□□□□ -0.24
HOXD3-204ENST00000459979 GSG1LQ6UXU4 331 aa13.57□□□□□ -0.24
HOXD3-204ENST00000459979 NRARPQ7Z6K4 114 aa13.57□□□□□ -0.24
HOXD3-204ENST00000459979 TRPT1Q86TN4 253 aaKnown RBP13.57□□□□□ -0.24
HOXD3-204ENST00000459979 GATAD1Q8WUU5 269 aa13.57□□□□□ -0.24
HOXD3-204ENST00000459979 GPN1Q9HCN4 374 aaPredicted RBP13.57□□□□□ -0.24
HOXD3-204ENST00000459979 PRAF2O60831 178 aa13.56□□□□□ -0.24
HOXD3-204ENST00000459979 DEDDO75618 318 aa13.56□□□□□ -0.24
HOXD3-204ENST00000459979 S100A7P31151 101 aa13.56□□□□□ -0.24
HOXD3-204ENST00000459979 PLP1P60201 277 aa13.56□□□□□ -0.24
HOXD3-204ENST00000459979 SNRPD3P62318 126 aaKnown RBP13.56□□□□□ -0.24
HOXD3-204ENST00000459979 CYP2G1PQ6ZSU1 146 aa13.56□□□□□ -0.24
HOXD3-204ENST00000459979 STHQ8IWL8 128 aa13.56□□□□□ -0.24
HOXD3-204ENST00000459979 SMCO3A2RU48 225 aa13.55□□□□□ -0.24
HOXD3-204ENST00000459979 L7N2F9 121 aa13.55□□□□□ -0.24
HOXD3-204ENST00000459979 ATF4P18848 351 aaPredicted RBP13.55□□□□□ -0.24
HOXD3-204ENST00000459979 GATA2P23769 480 aaPredicted RBP13.55□□□□□ -0.24
HOXD3-204ENST00000459979 VAMP2P63027 116 aa13.55□□□□□ -0.24
HOXD3-204ENST00000459979 ARL16Q0P5N6 197 aa13.55□□□□□ -0.24
HOXD3-204ENST00000459979 MARVELD1Q9BSK0 173 aa13.55□□□□□ -0.24
HOXD3-204ENST00000459979 MGAT4CQ9UBM8 478 aa13.55□□□□□ -0.24
HOXD3-204ENST00000459979 ZNF98A6NK75 572 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 INMT-MINDY4F8WBC2 141 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 DEFA1P59665 94 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 DEFA3P59666 94 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 RRAS2P62070 204 aaPredicted RBP13.54□□□□□ -0.24
HOXD3-204ENST00000459979 TMEM41BQ5BJD5 291 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 PSMG4Q5JS54 123 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 SAMD13Q5VXD3 122 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 MORN3Q6PF18 240 aaPredicted RBP13.54□□□□□ -0.24
HOXD3-204ENST00000459979 TEPPQ6URK8 271 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 OR8I2Q8N0Y5 310 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 PPP1R14BQ96C90 147 aa13.54□□□□□ -0.24
HOXD3-204ENST00000459979 LSM5Q9Y4Y9 91 aaKnown RBP13.54□□□□□ -0.24
HOXD3-204ENST00000459979 SOCS3O14543 225 aa13.53□□□□□ -0.24
HOXD3-204ENST00000459979 SPP1P10451 314 aa13.53□□□□□ -0.24
HOXD3-204ENST00000459979 ORM2P19652 201 aa13.53□□□□□ -0.24
HOXD3-204ENST00000459979 PVALBP20472 110 aaPredicted RBP13.53□□□□□ -0.24
HOXD3-204ENST00000459979 GPR82Q96P67 336 aa13.53□□□□□ -0.24
HOXD3-204ENST00000459979 TMEM147Q9BVK8 224 aa13.53□□□□□ -0.24
HOXD3-204ENST00000459979 KNCNA6PVL3 124 aa13.52□□□□□ -0.25
HOXD3-204ENST00000459979 CA1P00915 261 aaPredicted RBP13.52□□□□□ -0.25
HOXD3-204ENST00000459979 GIG44P09565 113 aaPredicted RBP13.52□□□□□ -0.25
HOXD3-204ENST00000459979 PSMB3P49720 205 aa13.52□□□□□ -0.25
HOXD3-204ENST00000459979 PMS2P11Q13670 270 aa13.52□□□□□ -0.25
HOXD3-204ENST00000459979 ACTL10Q5JWF8 245 aa13.52□□□□□ -0.25
HOXD3-204ENST00000459979 OR1B1Q8NGR6 318 aa13.52□□□□□ -0.25
HOXD3-204ENST00000459979 LINC00476Q8WZB0 136 aa13.52□□□□□ -0.25
HOXD3-204ENST00000459979 LYRM2Q9NU23 88 aaPredicted RBP13.52□□□□□ -0.25
HOXD3-204ENST00000459979 A0A0J9YWU9 116 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 HYPMO75409 117 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 LINC00869P0C866 280 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 ID1P41134 155 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 GALR1P47211 349 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 MEOX2P50222 304 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 CAV2P51636 162 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 RAB32Q13637 225 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 PXDC1Q5TGL8 231 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 SLC25A32Q9H2D1 315 aa13.51□□□□□ -0.25
HOXD3-204ENST00000459979 FAM24AA6NFZ4 105 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 H3BRN7 92 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 ISLRO14498 428 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 LY6G6CO95867 125 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 BCAP31P51572 246 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 RAP2BP61225 183 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 SLC38A11Q08AI6 406 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 S100A7AQ86SG5 101 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 ZNF546Q86UE3 836 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 C17orf77Q96MU5 243 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 RARRES2Q99969 163 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 SHANK2-AS3Q9BTD1 123 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 SLC25A39Q9BZJ4 359 aaPredicted RBP13.5□□□□□ -0.25
HOXD3-204ENST00000459979 NMES1Q9C002 83 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 HIGD1AQ9Y241 93 aa13.5□□□□□ -0.25
HOXD3-204ENST00000459979 CXorf65A6NEN9 183 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 H3BMM0 161 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 HLA-DRB4P13762 266 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 SULT1A1P50225 295 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 S100A10P60903 97 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 EWSR1Q01844 656 aaKnown RBP eCLIP13.49□□□□□ -0.25
HOXD3-204ENST00000459979 VWC2Q2TAL6 325 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 TMEM252Q8N6L7 170 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms