RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CSTL1Q9H114 145 aa13.78□□□□□ -0.2
USP39-209ENST00000458268 NRN1Q9NPD7 142 aa13.78□□□□□ -0.2
USP39-209ENST00000458268 KIR2DL5BA0A0G2JN68 375 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 KIR2DL5BA0A0G2JPC4 375 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 PMS2P5A8MQ11 134 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 INMT-MINDY4F8WBC2 141 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 UBE2CO00762 179 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 SIX6O95475 246 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 PVALBP20472 110 aaPredicted RBP13.77□□□□□ -0.21
USP39-209ENST00000458268 DLK1P80370 383 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 ACTL10Q5JWF8 245 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 CYP2G1PQ6ZSU1 146 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 TMEM144Q7Z5S9 345 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 KIR2DL5AQ8N109 375 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 KIR2DL5BQ8NHK3 375 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 TMEM147Q9BVK8 224 aa13.77□□□□□ -0.21
USP39-209ENST00000458268 FAM24AA6NFZ4 105 aa13.76□□□□□ -0.21
USP39-209ENST00000458268 TAS2R30P59541 319 aa13.76□□□□□ -0.21
USP39-209ENST00000458268 SNRPD3P62318 126 aaKnown RBP13.76□□□□□ -0.21
USP39-209ENST00000458268 SLC38A11Q08AI6 406 aa13.76□□□□□ -0.21
USP39-209ENST00000458268 RAB32Q13637 225 aa13.76□□□□□ -0.21
USP39-209ENST00000458268 CASC10Q5T4H9 136 aa13.76□□□□□ -0.21
USP39-209ENST00000458268 Q6ZWC4 215 aa13.76□□□□□ -0.21
USP39-209ENST00000458268 TMEM217Q8N7C4 229 aa13.76□□□□□ -0.21
USP39-209ENST00000458268 CST7O76096 145 aa13.75□□□□□ -0.21
USP39-209ENST00000458268 CFDP00746 253 aaPredicted RBP13.75□□□□□ -0.21
USP39-209ENST00000458268 OR5G3P0C626 314 aa13.75□□□□□ -0.21
USP39-209ENST00000458268 LINC00869P0C866 280 aa13.75□□□□□ -0.21
USP39-209ENST00000458268 ARL16Q0P5N6 197 aa13.75□□□□□ -0.21
USP39-209ENST00000458268 LINC00052Q96N35 136 aa13.75□□□□□ -0.21
USP39-209ENST00000458268 NPVFQ9HCQ7 196 aa13.75□□□□□ -0.21
USP39-209ENST00000458268 FBXL17Q9UF56 701 aa13.75□□□□□ -0.21
USP39-209ENST00000458268 A0A0J9YWU9 116 aa13.74□□□□□ -0.21
USP39-209ENST00000458268 RAP2BP61225 183 aa13.74□□□□□ -0.21
USP39-209ENST00000458268 LRRC37A5PQ49AS3 106 aa13.74□□□□□ -0.21
USP39-209ENST00000458268 RNF183Q96D59 192 aa13.74□□□□□ -0.21
USP39-209ENST00000458268 SLC25A32Q9H2D1 315 aa13.74□□□□□ -0.21
USP39-209ENST00000458268 SSNA1O43805 119 aa13.73□□□□□ -0.21
USP39-209ENST00000458268 DEFB1P60022 68 aa13.73□□□□□ -0.21
USP39-209ENST00000458268 TEPPQ6URK8 271 aa13.73□□□□□ -0.21
USP39-209ENST00000458268 SCRT1Q9BWW7 348 aa13.73□□□□□ -0.21
USP39-209ENST00000458268 ARL6Q9H0F7 186 aa13.73□□□□□ -0.21
USP39-209ENST00000458268 HIGD1AQ9Y241 93 aa13.73□□□□□ -0.21
USP39-209ENST00000458268 ZNF98A6NK75 572 aa13.72□□□□□ -0.21
USP39-209ENST00000458268 PRAF2O60831 178 aa13.72□□□□□ -0.21
USP39-209ENST00000458268 IGKV3-20P01619 116 aa13.72□□□□□ -0.21
USP39-209ENST00000458268 ID1P41134 155 aa13.72□□□□□ -0.21
USP39-209ENST00000458268 GALR1P47211 349 aa13.72□□□□□ -0.21
USP39-209ENST00000458268 FGL1Q08830 312 aa13.72□□□□□ -0.21
USP39-209ENST00000458268 PMS2P11Q13670 270 aa13.72□□□□□ -0.21
USP39-209ENST00000458268 TP53TG1Q9Y2A0 90 aa13.72□□□□□ -0.21
USP39-209ENST00000458268 HYPMO75409 117 aa13.71□□□□□ -0.21
USP39-209ENST00000458268 C1orf194Q5T5A4 169 aa13.71□□□□□ -0.21
USP39-209ENST00000458268 TRPT1Q86TN4 253 aaKnown RBP13.71□□□□□ -0.21
USP39-209ENST00000458268 C16orf92Q96LL3 132 aa13.71□□□□□ -0.21
USP39-209ENST00000458268 UHRF2Q96PU4 802 aa13.71□□□□□ -0.21
USP39-209ENST00000458268 RARRES2Q99969 163 aa13.71□□□□□ -0.21
USP39-209ENST00000458268 RSG1Q9BU20 258 aa13.71□□□□□ -0.21
USP39-209ENST00000458268 UBE2L5PA0A1B0GUS4 154 aa13.7□□□□□ -0.22
USP39-209ENST00000458268 IGSF23A1L1A6 192 aa13.7□□□□□ -0.22
USP39-209ENST00000458268 S100A7P31151 101 aa13.7□□□□□ -0.22
USP39-209ENST00000458268 SELENOTP62341 195 aa13.7□□□□□ -0.22
USP39-209ENST00000458268 STX12Q86Y82 276 aa13.7□□□□□ -0.22
USP39-209ENST00000458268 OR11H2Q8NH07 326 aa13.7□□□□□ -0.22
USP39-209ENST00000458268 SLC25A39Q9BZJ4 359 aaPredicted RBP13.7□□□□□ -0.22
USP39-209ENST00000458268 CLEC5AQ9NY25 188 aa13.7□□□□□ -0.22
USP39-209ENST00000458268 AGPAT2O15120 278 aa13.69□□□□□ -0.22
USP39-209ENST00000458268 DEDDO75618 318 aa13.69□□□□□ -0.22
USP39-209ENST00000458268 ATF4P18848 351 aaPredicted RBP13.69□□□□□ -0.22
USP39-209ENST00000458268 C4BPBP20851 252 aa13.69□□□□□ -0.22
USP39-209ENST00000458268 BAXQ07812 192 aa13.69□□□□□ -0.22
USP39-209ENST00000458268 ZNF546Q86UE3 836 aa13.69□□□□□ -0.22
USP39-209ENST00000458268 IL17DQ8TAD2 202 aa13.69□□□□□ -0.22
USP39-209ENST00000458268 C11orf1Q9H5F2 150 aa13.69□□□□□ -0.22
USP39-209ENST00000458268 LYRM2Q9NU23 88 aaPredicted RBP13.69□□□□□ -0.22
USP39-209ENST00000458268 SLC45A2Q9UMX9 530 aa13.69□□□□□ -0.22
USP39-209ENST00000458268 CXorf65A6NEN9 183 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 FNDC10F2Z333 226 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 H3BRN7 92 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 DEFB4AO15263 64 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 RLN2P04090 185 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 SULT1A1P50225 295 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 FXYD7P58549 80 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 TMEM252Q8N6L7 170 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 MGST2Q99735 147 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 MARVELD1Q9BSK0 173 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 GGACTQ9BVM4 153 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 UQCC1Q9NVA1 299 aa13.68□□□□□ -0.22
USP39-209ENST00000458268 COX7A2P2O60397 106 aa13.67□□□□□ -0.22
USP39-209ENST00000458268 SPP1P10451 314 aa13.67□□□□□ -0.22
USP39-209ENST00000458268 CAMLGP49069 296 aa13.67□□□□□ -0.22
USP39-209ENST00000458268 PSMB3P49720 205 aa13.67□□□□□ -0.22
USP39-209ENST00000458268 EWSR1Q01844 656 aaKnown RBP eCLIP13.67□□□□□ -0.22
USP39-209ENST00000458268 IL15RAQ13261 267 aa13.67□□□□□ -0.22
USP39-209ENST00000458268 GDF5OSQ5U4N7 250 aa13.67□□□□□ -0.22
USP39-209ENST00000458268 IGFL4Q6B9Z1 124 aa13.67□□□□□ -0.22
USP39-209ENST00000458268 MORN3Q6PF18 240 aaPredicted RBP13.67□□□□□ -0.22
USP39-209ENST00000458268 OR4B1Q8NGF8 309 aa13.67□□□□□ -0.22
USP39-209ENST00000458268 GATAD1Q8WUU5 269 aa13.67□□□□□ -0.22
USP39-209ENST00000458268 SHANK2-AS3Q9BTD1 123 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms