RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 VN1R17PQ8TDU5 208 aa12.64□□□□□ -0.39
SNX17-204ENST00000453453 SLC35E1Q96K37 410 aa12.64□□□□□ -0.39
SNX17-204ENST00000453453 V9GYV3 84 aa12.64□□□□□ -0.39
SNX17-204ENST00000453453 DIRC3C9JPN6 131 aa12.63□□□□□ -0.39
SNX17-204ENST00000453453 K7EN84 100 aa12.63□□□□□ -0.39
SNX17-204ENST00000453453 MOSP00540 346 aa12.63□□□□□ -0.39
SNX17-204ENST00000453453 KLF17Q5JT82 389 aaPredicted RBP12.63□□□□□ -0.39
SNX17-204ENST00000453453 OR5B3Q8NH48 314 aa12.63□□□□□ -0.39
SNX17-204ENST00000453453 BET1LQ9NYM9 111 aa12.63□□□□□ -0.39
SNX17-204ENST00000453453 MRPL27Q9P0M9 148 aaKnown RBP12.63□□□□□ -0.39
SNX17-204ENST00000453453 FBXL7Q9UJT9 491 aa12.63□□□□□ -0.39
SNX17-204ENST00000453453 YTHDF2Q9Y5A9 579 aaKnown RBP12.63□□□□□ -0.39
SNX17-204ENST00000453453 OR9G9P0C7N8 305 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 FAM106CPP0CH98 169 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 SAA1P0DJI8 122 aaPredicted RBP12.62□□□□□ -0.39
SNX17-204ENST00000453453 ATP5IP56385 69 aaPredicted RBP12.62□□□□□ -0.39
SNX17-204ENST00000453453 GCSAMLQ5JQS6 135 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 OR4A5Q8NH83 315 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 AJUBAQ96IF1 538 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 C19orf24Q9BVV8 132 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 VPS13CQ709C8 3753 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 ABCA1O95477 2261 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 PGPEP1LA6NFU8 196 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 SRRM4A7MD48 611 aaKnown RBP12.62□□□□□ -0.39
SNX17-204ENST00000453453 CD5LO43866 347 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 AMY1AP04745 511 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 IER3P46695 156 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 OR5I1Q13606 314 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 PMCHL1Q16048 86 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 GNB4Q9HAV0 340 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 HEYLQ9NQ87 328 aaPredicted RBP12.62□□□□□ -0.39
SNX17-204ENST00000453453 PRNDQ9UKY0 176 aa12.62□□□□□ -0.39
SNX17-204ENST00000453453 MRPS16Q9Y3D3 137 aaKnown RBP12.62□□□□□ -0.39
SNX17-204ENST00000453453 UPK2O00526 184 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 ISLRO14498 428 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 TMEM11P17152 192 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 RELBQ01201 579 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 SPATA45Q537H7 98 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 MIC13Q5XKP0 118 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 TEPPQ6URK8 271 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 TMEM136Q6ZRR5 245 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 TEX45Q8NA69 505 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 WIPF2Q8TF74 440 aaPredicted RBP12.61□□□□□ -0.39
SNX17-204ENST00000453453 COMMD5Q9GZQ3 224 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 MEGF9Q9H1U4 602 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 NRN1Q9NPD7 142 aa12.61□□□□□ -0.39
SNX17-204ENST00000453453 FLNAP21333 2647 aaKnown RBP12.61□□□□□ -0.39
SNX17-204ENST00000453453 C15orf61A6NNL5 157 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 RRHO14718 337 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 SLC25A17O43808 307 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 ZNF324O75467 553 aaPredicted RBP12.6□□□□□ -0.39
SNX17-204ENST00000453453 IGLV2-23P01705 113 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 IGLC2P0DOY2 106 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 IGLC3P0DOY3 106 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 PLGLAQ15195 96 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 MMDQ15546 238 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 OR2D3Q8NGH3 330 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 TMEM167AQ8TBQ9 72 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 CDC42EP3Q9UKI2 254 aa12.6□□□□□ -0.39
SNX17-204ENST00000453453 NBR2O15453 112 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 FSHBP01225 129 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 DEFA4P12838 97 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 GNG4P50150 75 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 PRR20EP86478 221 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 PRR20CP86479 221 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 PRR20DP86480 221 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 PRR20BP86481 221 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 PRR20AP86496 221 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 EBI3Q14213 229 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 PSG5Q15238 335 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 TDRG1Q3Y452 100 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 TIGITQ495A1 244 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 RITA1Q96K30 269 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 C1RLQ9NZP8 487 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 FOXA2Q9Y261 457 aaPredicted RBP12.59□□□□□ -0.39
SNX17-204ENST00000453453 MYO9AB2RTY4 2548 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 TOMM40O96008 361 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 HNF1AP20823 631 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 CD24P25063 80 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 AMTP48728 403 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 HNRNPA3P51991 378 aaKnown RBP12.59□□□□□ -0.39
SNX17-204ENST00000453453 KRTDAPP60985 99 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 RPL8P62917 257 aaKnown RBP12.59□□□□□ -0.39
SNX17-204ENST00000453453 OR8I2Q8N0Y5 310 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 DNAJC4Q9NNZ3 241 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 YAE1D1Q9NRH1 226 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 NAT8BQ9UHF3 227 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 TCF19Q9Y242 345 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 LAMTOR2Q9Y2Q5 125 aa12.59□□□□□ -0.39
SNX17-204ENST00000453453 TRAV3A0A0B4J244 114 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 SMIM27A0A1W2PRY6 76 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 A0A1W2PS18 150 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 CYSRT1A8MQ03 144 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 SLC17A3O00476 420 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 ACTL6BO94805 426 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 CNTFRP26992 372 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 ANKRD39Q53RE8 183 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 CENPWQ5EE01 88 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 FAM162BQ5T6X4 162 aa12.58□□□□□ -0.4
SNX17-204ENST00000453453 PQLC2Q6ZP29 291 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms