RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 AKR1C8PQ5T2L2 129 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 TEX261Q6UWH6 196 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 TMEM254Q8TBM7 123 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 CEP19Q96LK0 163 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 SLC25A21Q9BQT8 299 aaPredicted RBP0.68□□□□□ -2.3
USP40-209ENST00000452724 SH3BGRL3Q9H299 93 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 PRNDQ9UKY0 176 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 CHCHD2Q9Y6H1 151 aaPredicted RBP0.68□□□□□ -2.3
USP40-209ENST00000452724 LY96Q9Y6Y9 160 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 U3KQ87 197 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 ZNF469Q96JG9 3925 aaPredicted RBP0.68□□□□□ -2.3
USP40-209ENST00000452724 TCRBV4S1A1TA0A5B7 111 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 H7C1C5 153 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 CCL16O15467 120 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 TIMM17BO60830 172 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 HLA-EP13747 358 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 NCALDP61601 193 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 LCN6P62502 163 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 UBE2BP63146 152 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 TAF1AQ15573 450 aaPredicted RBP0.67□□□□□ -2.3
USP40-209ENST00000452724 HACD4Q5VWC8 232 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 C2orf82Q6UX34 121 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 TMED4Q7Z7H5 227 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 OR10K1Q8NGX5 313 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 TP53RKQ96S44 253 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 TMEM70Q9BUB7 260 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 PBOV1Q9GZY1 135 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 STOML2Q9UJZ1 356 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 LAMB4A4D0S4 1761 aa0.67□□□□□ -2.3
USP40-209ENST00000452724 CCDC160A6NGH7 325 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 E7EUB6 86 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 G3V2T6 193 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 NUPR1O60356 82 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 PHBP35232 272 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 DSCR4P56555 118 aaPredicted RBP0.66□□□□□ -2.3
USP40-209ENST00000452724 ROMO1P60602 79 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 BASP1P80723 227 aaKnown RBP0.66□□□□□ -2.3
USP40-209ENST00000452724 POU6F1Q14863 301 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 EIF5AL1Q6IS14 154 aaKnown RBP0.66□□□□□ -2.3
USP40-209ENST00000452724 CLECL1Q8IZS7 167 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 PATE1Q8WXA2 126 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 CDC42SE1Q9NRR8 79 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 LYRM2Q9NU23 88 aaPredicted RBP0.66□□□□□ -2.3
USP40-209ENST00000452724 EML6Q6ZMW3 1958 aa0.66□□□□□ -2.3
USP40-209ENST00000452724 EIF3AQ14152 1382 aaKnown RBP0.66□□□□□ -2.3
USP40-209ENST00000452724 PCF11O94913 1555 aaKnown RBP0.66□□□□□ -2.3
USP40-209ENST00000452724 KDM6AO15550 1401 aaPredicted RBP0.65□□□□□ -2.3
USP40-209ENST00000452724 RIMBP3CA6NJZ7 1639 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 RIMBP3BA6NNM3 1639 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 HECW1Q76N89 1606 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 RIMBP3Q9UFD9 1639 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 A0A087WSZ3 146 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 C17orf112F2Z3M2 114 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 ATG12O94817 140 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 IFNA1P01562 189 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 OR10J4P0C629 311 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 NFYBP25208 207 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 DYNLT3P51808 116 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 RPL19P84098 196 aaKnown RBP0.65□□□□□ -2.31
USP40-209ENST00000452724 FAM74A1Q5RGS3 127 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 C4orf22Q6V702 233 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 S100A7AQ86SG5 101 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 ST6GALNAC3Q8NDV1 305 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 NUP35Q8NFH5 326 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 MALSU1Q96EH3 234 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 NPCDR1Q9BY65 106 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 POPDC3Q9HBV1 291 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 SSR3Q9UNL2 185 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 DOCK5Q9H7D0 1870 aa0.65□□□□□ -2.31
USP40-209ENST00000452724 TNS3Q68CZ2 1445 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 TRAV10A0A0B4J240 114 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 TRAV5A0A0B4J249 113 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 IGHV1-58A0A0C4DH39 117 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 TRBV6-4A0A1B0GX49 114 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 CCL25O15444 150 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 CST8O60676 142 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 APOA2P02652 100 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 ZNF25P17030 456 aaPredicted RBP0.64□□□□□ -2.31
USP40-209ENST00000452724 GNG5P63218 68 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 ZNF833PQ6ZTB9 187 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 EXOC3-AS1Q8N2X6 119 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 OR13C6PQ8NH95 151 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 ZNF431Q8TF32 576 aaPredicted RBP0.64□□□□□ -2.31
USP40-209ENST00000452724 AP3S1Q92572 193 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 BORCS5Q969J3 196 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 LYSMD1Q96S90 227 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 PAIP2Q9BPZ3 127 aaKnown RBP0.64□□□□□ -2.31
USP40-209ENST00000452724 ORMDL1Q9P0S3 153 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 TMEM14CQ9P0S9 112 aa0.64□□□□□ -2.31
USP40-209ENST00000452724 RIIAD1A6NNX1 92 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 TMEM256-PLSCR3K7ERE1 68 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 IFNA14P01570 189 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 OGNP20774 298 aaKnown RBP0.63□□□□□ -2.31
USP40-209ENST00000452724 KRTAP26-1Q6PEX3 210 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 PATE2Q6UY27 113 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 LINC00052Q96N35 136 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 AMELYQ99218 206 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 GINS3Q9BRX5 216 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 CCDC94Q9BW85 323 aaPredicted RBP0.63□□□□□ -2.31
USP40-209ENST00000452724 OR2J1Q9GZK6 312 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 324.3 ms