RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 GGNBP1Q5YKI7 109 aa9.48□□□□□ -0.89
HMGB3-204ENST00000448905 GSG1LQ6UXU4 331 aa9.48□□□□□ -0.89
HMGB3-204ENST00000448905 OR51S1Q8NGJ8 323 aa9.48□□□□□ -0.89
HMGB3-204ENST00000448905 OR1S1Q8NH92 325 aa9.48□□□□□ -0.89
HMGB3-204ENST00000448905 SMIM4Q8WVI0 70 aa9.48□□□□□ -0.89
HMGB3-204ENST00000448905 C16orf92Q96LL3 132 aa9.48□□□□□ -0.89
HMGB3-204ENST00000448905 SCRT1Q9BWW7 348 aa9.48□□□□□ -0.89
HMGB3-204ENST00000448905 WDR12Q9GZL7 423 aaKnown RBP9.48□□□□□ -0.89
HMGB3-204ENST00000448905 RBKSQ9H477 322 aa9.48□□□□□ -0.89
HMGB3-204ENST00000448905 LOC102723971A0A1B0GUV8 181 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 CTDSPLO15194 276 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 GALR1P47211 349 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 PAX9P55771 341 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 FAM3BP58499 235 aaPredicted RBP9.47□□□□□ -0.89
HMGB3-204ENST00000448905 DAD1P61803 113 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 IL18Q14116 193 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 ZNF79Q15937 498 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 C1orf134Q5TEV5 83 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 LYZL2Q7Z4W2 148 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 DIRAS2Q96HU8 199 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 ATG101Q9BSB4 218 aa9.47□□□□□ -0.89
HMGB3-204ENST00000448905 RSL24D1Q9UHA3 163 aaKnown RBP9.47□□□□□ -0.89
HMGB3-204ENST00000448905 YTHDF2Q9Y5A9 579 aaKnown RBP9.47□□□□□ -0.89
HMGB3-204ENST00000448905 CTDSP2O14595 271 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 B2MP61769 119 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 OR2F1Q13607 317 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 ZNF709Q8N972 641 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 C15orf53Q8NAA6 179 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 OR4C16Q8NGL9 310 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 TRGV9Q99603 122 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 NAA50Q9GZZ1 169 aaKnown RBP9.46□□□□□ -0.9
HMGB3-204ENST00000448905 SLC35B3Q9H1N7 401 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 MIXL1Q9H2W2 232 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 MCUBQ9NWR8 336 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 PLA2G2EQ9NZK7 142 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 PAIP2BQ9ULR5 123 aaKnown RBP9.46□□□□□ -0.9
HMGB3-204ENST00000448905 DNAH6Q9C0G6 4158 aa9.46□□□□□ -0.9
HMGB3-204ENST00000448905 A0A0J9YX75 114 aa9.45□□□□□ -0.9
HMGB3-204ENST00000448905 MED6O75586 246 aa9.45□□□□□ -0.9
HMGB3-204ENST00000448905 DUSP14O95147 198 aaKnown RBP9.45□□□□□ -0.9
HMGB3-204ENST00000448905 DEFB1P60022 68 aa9.45□□□□□ -0.9
HMGB3-204ENST00000448905 Q6ZR54 194 aa9.45□□□□□ -0.9
HMGB3-204ENST00000448905 IGF2BP2-AS1Q96M15 143 aa9.45□□□□□ -0.9
HMGB3-204ENST00000448905 GPR82Q96P67 336 aa9.45□□□□□ -0.9
HMGB3-204ENST00000448905 RSG1Q9BU20 258 aa9.45□□□□□ -0.9
HMGB3-204ENST00000448905 DOK5Q9P104 306 aa9.45□□□□□ -0.9
HMGB3-204ENST00000448905 SLC45A2Q9UMX9 530 aa9.45□□□□□ -0.9
HMGB3-204ENST00000448905 IGKV1D-37A0A075B6S9 117 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 ANKRD20A5PA0PJZ0 165 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 SOCS3O14543 225 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 ALDH3B2P48448 385 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 TMEM88Q6PEY1 159 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 GPR141Q7Z602 305 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 C1orf158Q8N1D5 194 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 OR4D5Q8NGN0 318 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 OR1B1Q8NGR6 318 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 CIB3Q96Q77 187 aaPredicted RBP9.44□□□□□ -0.9
HMGB3-204ENST00000448905 PRR13Q9NZ81 148 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 AGRNO00468 2067 aa9.44□□□□□ -0.9
HMGB3-204ENST00000448905 DNAH17Q9UFH2 4485 aa9.43□□□□□ -0.9
HMGB3-204ENST00000448905 DUXBA0A1W2PPF3 345 aa9.43□□□□□ -0.9
HMGB3-204ENST00000448905 LYRM9A8MSI8 78 aa9.43□□□□□ -0.9
HMGB3-204ENST00000448905 F6UB75 175 aa9.43□□□□□ -0.9
HMGB3-204ENST00000448905 FAUP35544 74 aaKnown RBP9.43□□□□□ -0.9
HMGB3-204ENST00000448905 S100A7AQ86SG5 101 aa9.43□□□□□ -0.9
HMGB3-204ENST00000448905 BPIFCQ8NFQ6 507 aa9.43□□□□□ -0.9
HMGB3-204ENST00000448905 SLC25A22Q9H936 323 aa9.43□□□□□ -0.9
HMGB3-204ENST00000448905 ZNF98A6NK75 572 aa9.42□□□□□ -0.9
HMGB3-204ENST00000448905 ORM2P19652 201 aa9.42□□□□□ -0.9
HMGB3-204ENST00000448905 TMEM147Q9BVK8 224 aa9.42□□□□□ -0.9
HMGB3-204ENST00000448905 PPP1R14DQ9NXH3 145 aa9.42□□□□□ -0.9
HMGB3-204ENST00000448905 DNAH2Q9P225 4427 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 FABP12A6NFH5 140 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 INSP01308 110 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 DEFB130BP0DP73 79 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 DEFB130AP0DP74 79 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 IAPPP10997 89 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 SLC25A6P12236 298 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 AP3S2P59780 193 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 TMEM128Q5BJH2 165 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 THAP8Q8NA92 274 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 KRTAP4-5Q9BYR2 181 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 DYNC1H1Q14204 4646 aaKnown RBP9.41□□□□□ -0.9
HMGB3-204ENST00000448905 FAT2Q9NYQ8 4349 aa9.41□□□□□ -0.9
HMGB3-204ENST00000448905 F5H768 121 aa9.4□□□□□ -0.9
HMGB3-204ENST00000448905 PITX3O75364 302 aa9.4□□□□□ -0.9
HMGB3-204ENST00000448905 CCL18P55774 89 aa9.4□□□□□ -0.9
HMGB3-204ENST00000448905 FGL1Q08830 312 aa9.4□□□□□ -0.9
HMGB3-204ENST00000448905 TMED4Q7Z7H5 227 aa9.4□□□□□ -0.9
HMGB3-204ENST00000448905 LRRC20Q8TCA0 184 aa9.4□□□□□ -0.9
HMGB3-204ENST00000448905 RNF24Q9Y225 148 aa9.4□□□□□ -0.9
HMGB3-204ENST00000448905 MUC4Q99102 2169 aa9.4□□□□□ -0.91
HMGB3-204ENST00000448905 ABCA13Q86UQ4 5058 aa9.4□□□□□ -0.91
HMGB3-204ENST00000448905 CBY3A6NI87 242 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 A8MTW9 85 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 ZNF705GA8MUZ8 300 aaPredicted RBP9.39□□□□□ -0.91
HMGB3-204ENST00000448905 WRBO00258 174 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 SYNGR2O43760 224 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 NUDT3O95989 172 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 VAMP1P23763 118 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms