RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 STHQ8IWL8 128 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 TPSG1Q9NRR2 321 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 PRB4P10163 310 aaPredicted RBP5.96□□□□□ -1.46
SYNE1-213ENST00000448038 G0S2P27469 103 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 RPL23P62829 140 aaKnown RBP5.96□□□□□ -1.46
SYNE1-213ENST00000448038 NDPQ00604 133 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 ZNF56Q15929 161 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 ZNF841Q6ZN19 808 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 FAM110DQ8TAY7 271 aaPredicted RBP5.96□□□□□ -1.46
SYNE1-213ENST00000448038 RPP21Q9H633 154 aaKnown RBP5.96□□□□□ -1.46
SYNE1-213ENST00000448038 IL36BQ9NZH7 164 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 PSG8Q9UQ74 426 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 GRIFINA4D1Z8 144 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 OR4C46A6NHA9 309 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 FNDC10F2Z333 226 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 TCAPO15273 167 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 BTF3P20290 206 aaKnown RBP5.95□□□□□ -1.46
SYNE1-213ENST00000448038 HBBP68871 147 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 LINC01587Q99440 93 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 MUC21A0A0G2JKD1 596 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 MUC21A0A140T8X8 626 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 CBY3A6NI87 242 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 DUSP14O95147 198 aaKnown RBP5.95□□□□□ -1.46
SYNE1-213ENST00000448038 CD33P20138 364 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 MUC21Q5SSG8 566 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 PEF1Q9UBV8 284 aaKnown RBP5.95□□□□□ -1.46
SYNE1-213ENST00000448038 FABP5P3A8MUU1 101 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 SAP30O75446 220 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 TOMM40O96008 361 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 RNF224P0DH78 156 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 HOXB4P17483 251 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-213ENST00000448038 SRIP30626 198 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 PTTG1IPP53801 180 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 TMEM183BQ1AE95 376 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 IL17RELQ6ZVW7 336 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 DTX2Q86UW9 622 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 MAP1LC3AQ9H492 121 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 PSMG4Q5JS54 123 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 C19orf35Q6ZS72 473 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 CDC42EP3Q9UKI2 254 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 TRAV1-1A0A0B4J248 108 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 SRRM4A7MD48 611 aaKnown RBP5.95□□□□□ -1.46
SYNE1-213ENST00000448038 NPIPB6E9PJ23 425 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 TMEM50AO95807 157 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 PAX1P15863 534 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 CBLN1P23435 193 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 EXOC3-AS1Q8N2X6 119 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 ASCL2Q99929 193 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 RNASE7Q9H1E1 156 aaKnown RBP5.95□□□□□ -1.46
SYNE1-213ENST00000448038 CSPG4Q6UVK1 2322 aa5.95□□□□□ -1.46
SYNE1-213ENST00000448038 TLN1Q9Y490 2541 aaKnown RBP5.94□□□□□ -1.46
SYNE1-213ENST00000448038 TRBV9A0A0B4J1U6 114 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 A0A1B0GUT8 65 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 FAM181BA6NEQ2 426 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 NDUFB8O95169 186 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 PAX9P55771 341 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 FAM120AOSQ5T036 256 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 C8orf31Q8N9H6 132 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 AGMATQ9BSE5 352 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 JKAMPQ9P055 326 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 ZFP30Q9Y2G7 519 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 PGPEP1LA6NFU8 196 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 C10orf105Q8TEF2 133 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 HNRNPA3P51991 378 aaKnown RBP5.94□□□□□ -1.46
SYNE1-213ENST00000448038 OVOL1O14753 267 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 C22orf34Q6ZV56 151 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 FER1L6-AS1Q8NA97 138 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 OCC1Q8TAD7 63 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 VN1R17PQ8TDU5 208 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 PARD6GQ9BYG4 376 aaPredicted RBP5.94□□□□□ -1.46
SYNE1-213ENST00000448038 TRBV20OR9-2A0A075B6H5 130 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 OVOL3O00110 214 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 WT1-ASQ06250 92 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 SMAGPQ0VAQ4 97 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 OR11H6Q8NGC7 330 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 WFDC12Q8WWY7 111 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 CYYR1Q96J86 154 aa5.94□□□□□ -1.46
SYNE1-213ENST00000448038 ATRXP46100 2492 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 LEPP41159 167 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 TMEM97Q5BJF2 176 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 ARFGEF3Q5TH69 2177 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 IGKV2-40A0A087WW87 121 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-213ENST00000448038 HIGD1CA8MV81 97 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 IGKV2D-40P01614 121 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-213ENST00000448038 ZNF688P0C7X2 276 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 RHPN1-AS1Q9BWJ2 59 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 C19orf84I3L1E1 186 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 UBE2L6O14933 153 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 NUDT3O95989 172 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 CD7P09564 240 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 SYNJ2BPP57105 145 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 HERVK_113P61574 105 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 AMMECR1LQ6DCA0 310 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 A0A087WWC5 75 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 TRAV21A0A0B4J279 112 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 CD5P06127 495 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 FOXA3P55318 350 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-213ENST00000448038 POU2AF1Q16633 256 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 TMEM249Q2WGJ8 235 aa5.93□□□□□ -1.46
SYNE1-213ENST00000448038 DEFB112Q30KQ8 113 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms