RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 Q71RC1 249 aaPredicted RBP7.57□□□□□ -1.2
CUX1-206ENST00000437600 LINC00305Q7Z4B0 112 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 SLC35E1Q96K37 410 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 SLC25A2Q9BXI2 301 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 CSTL1Q9H114 145 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 TECRQ9NZ01 308 aaKnown RBP7.57□□□□□ -1.2
CUX1-206ENST00000437600 IGKV1D-37A0A075B6S9 117 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 COX7A2P2O60397 106 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 ACTL10Q5JWF8 245 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 MRPL54Q6P161 138 aaKnown RBP7.57□□□□□ -1.2
CUX1-206ENST00000437600 GBGT1Q8N5D6 347 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 KAAG1Q9UBP8 84 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 MT-CO2P00403 227 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 C8orf88P0DMB2 117 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 PDLIM4P50479 330 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 CNN1P51911 297 aaKnown RBP7.57□□□□□ -1.2
CUX1-206ENST00000437600 TOMM20LQ6UXN7 152 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 MMD2Q8IY49 270 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 FAM167A-AS1Q96KT0 104 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 MS4A10Q96PG2 267 aa7.57□□□□□ -1.2
CUX1-206ENST00000437600 IGHV1-3A0A0C4DH29 117 aa7.56□□□□□ -1.2
CUX1-206ENST00000437600 PPBPP02775 128 aa7.56□□□□□ -1.2
CUX1-206ENST00000437600 BRS3P32247 399 aa7.56□□□□□ -1.2
CUX1-206ENST00000437600 RPL15P61313 204 aaKnown RBP7.56□□□□□ -1.2
CUX1-206ENST00000437600 C10orf113Q5VZT2 155 aa7.56□□□□□ -1.2
CUX1-206ENST00000437600 TMEM167AQ8TBQ9 72 aa7.56□□□□□ -1.2
CUX1-206ENST00000437600 RNF2Q99496 336 aa7.56□□□□□ -1.2
CUX1-206ENST00000437600 SRP14P37108 136 aaKnown RBP7.56□□□□□ -1.2
CUX1-206ENST00000437600 TDRG1Q3Y452 100 aa7.56□□□□□ -1.2
CUX1-206ENST00000437600 TNFRSF19Q9NS68 423 aa7.56□□□□□ -1.2
CUX1-206ENST00000437600 PAM16Q9Y3D7 125 aa7.56□□□□□ -1.2
CUX1-206ENST00000437600 IGHV3OR16-8A0A075B7F1 116 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 IGLC7A0M8Q6 106 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 BUB1B-PAK6H3BSN5 160 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 ISLRO14498 428 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 HES1Q14469 280 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 VMA21Q3ZAQ7 101 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 C11orf71Q6IPW1 123 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 PDPNQ86YL7 162 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 OR8B3Q8NGG8 313 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 RPEQ96AT9 228 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 OR8B2Q96RD0 313 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 VPS25Q9BRG1 176 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 IGHV3-35A0A0C4DH35 117 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 SNURFLB1AK76 121 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 CNIH1O95406 144 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 FOXL1Q12952 345 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 PRSS57Q6UWY2 283 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 BCL6BQ8N143 479 aaPredicted RBP7.55□□□□□ -1.2
CUX1-206ENST00000437600 OR1L6Q8NGR2 347 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 PAXXQ9BUH6 204 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 SIGLEC9Q9Y336 463 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 V9GYV3 84 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 ACANP16112 2415 aa7.55□□□□□ -1.2
CUX1-206ENST00000437600 PSMB11A5LHX3 300 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 CORTO00230 105 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 TIMM23O14925 209 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 IGHV3-23P01764 117 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 TMEM249Q2WGJ8 235 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 AMMECR1Q9Y4X0 333 aaPredicted RBP7.54□□□□□ -1.2
CUX1-206ENST00000437600 ABCA2Q9BZC7 2435 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 TRAV8-1A0A0A6YYK1 113 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 IGLV1-47P01700 117 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 IGLV2-8P01709 118 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 RBP4P02753 201 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 RPL27AP46776 148 aaKnown RBP7.54□□□□□ -1.2
CUX1-206ENST00000437600 SLAQ13239 276 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 MMDQ15546 238 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 TIGITQ495A1 244 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 PPP1R27Q86WC6 154 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 VSTM2AQ8TAG5 236 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 TIMD4Q96H15 378 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 MRPL18Q9H0U6 180 aaKnown RBP7.54□□□□□ -1.2
CUX1-206ENST00000437600 ITPR3Q14573 2671 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 PGPA6NDG6 321 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 PLA2G2AP14555 144 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 LCN2P80188 198 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 ZNF596Q8TC21 504 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 MIEN1Q9BRT3 115 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 TMEM167BQ9NRX6 74 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 IL36BQ9NZH7 164 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 NAT8BQ9UHF3 227 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 TP53TG3Q9ULZ0 132 aa7.54□□□□□ -1.2
CUX1-206ENST00000437600 FLNAP21333 2647 aaKnown RBP7.54□□□□□ -1.2
CUX1-206ENST00000437600 SETXQ7Z333 2677 aaKnown RBP7.54□□□□□ -1.2
CUX1-206ENST00000437600 MXRA5Q9NR99 2828 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 TCRBV4S1A1TA0A5B7 111 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 TAS2R45P59539 299 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 IBA57Q5T440 356 aaKnown RBP7.53□□□□□ -1.2
CUX1-206ENST00000437600 C17orf77Q96MU5 243 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 CLEC7AQ9BXN2 247 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 K7EP13 123 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 ZFP36P26651 326 aaKnown RBP7.53□□□□□ -1.2
CUX1-206ENST00000437600 MC5RP33032 325 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 GPR6P46095 362 aaPredicted RBP7.53□□□□□ -1.2
CUX1-206ENST00000437600 SUB1P53999 127 aaKnown RBP eCLIP7.53□□□□□ -1.2
CUX1-206ENST00000437600 LYZP61626 148 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 BAGE2Q86Y30 109 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 CACNG8Q8WXS5 425 aa7.53□□□□□ -1.2
CUX1-206ENST00000437600 SSBP4Q9BWG4 385 aaPredicted RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms