RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 FAM231BA6NCW3 169 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 KLK10O43240 276 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 PLAUP00749 431 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 IGLC2P0DOY2 106 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 IGLC3P0DOY3 106 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 GP9P14770 177 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 HBBP68871 147 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 MMDQ15546 238 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 ZNF841Q6ZN19 808 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 FAM19A2Q8N3H0 131 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 STPG4Q8N801 248 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 RITA1Q96K30 269 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 MRPS16Q9Y3D3 137 aaKnown RBP9.04□□□□□ -0.96
USP4-205ENST00000431357 M0R2Z0 102 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 LTAP01374 205 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 LDLRAD2Q5SZI1 272 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 C1orf122Q6ZSJ8 110 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 ZNF48Q96MX3 618 aaPredicted RBP9.04□□□□□ -0.96
USP4-205ENST00000431357 SIGLEC9Q9Y336 463 aa9.04□□□□□ -0.96
USP4-205ENST00000431357 F11RQ9Y624 299 aaKnown RBP9.04□□□□□ -0.96
USP4-205ENST00000431357 PLCE1Q9P212 2302 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 C19orf71A6NCJ1 209 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 GOSR1O95249 250 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 P01737 135 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 TCRAP04437 139 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 CAMPP49913 170 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 OR8B3Q8NGG8 313 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 DAZAP1Q96EP5 407 aaKnown RBP9.03□□□□□ -0.96
USP4-205ENST00000431357 OR8B2Q96RD0 313 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 RNF5Q99942 180 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 SRSF8Q9BRL6 282 aaKnown RBP9.03□□□□□ -0.96
USP4-205ENST00000431357 CLEC7AQ9BXN2 247 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 Q9H3A6 140 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 OTORQ9NRC9 128 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 TMEM14CQ9P0S9 112 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 RALYQ9UKM9 306 aaKnown RBP9.03□□□□□ -0.96
USP4-205ENST00000431357 HIGD1AQ9Y241 93 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 INSIG2Q9Y5U4 225 aa9.03□□□□□ -0.96
USP4-205ENST00000431357 IGHV2-26A0A0B4J1V2 119 aa9.02□□□□□ -0.96
USP4-205ENST00000431357 IGHV1-69-2A0A0G2JMI3 117 aa9.02□□□□□ -0.96
USP4-205ENST00000431357 FAM181BA6NEQ2 426 aa9.02□□□□□ -0.96
USP4-205ENST00000431357 TOX4O94842 621 aa9.02□□□□□ -0.96
USP4-205ENST00000431357 IGLV1-47P01700 117 aa9.02□□□□□ -0.96
USP4-205ENST00000431357 GFRALQ6UXV0 394 aa9.02□□□□□ -0.96
USP4-205ENST00000431357 ZNF835Q9Y2P0 537 aa9.02□□□□□ -0.96
USP4-205ENST00000431357 BDP1A6H8Y1 2624 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 IGHV3-72A0A0B4J1Y9 119 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 IGHV1-3A0A0C4DH29 117 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 TRBV6-1A0A0K0K1D8 114 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 SHISA9B4DS77 424 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 B9A039 149 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 E7EQL1 145 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 RBP4P02753 201 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 HNRNPA3P51991 378 aaKnown RBP9.02□□□□□ -0.97
USP4-205ENST00000431357 RBPJQ06330 500 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 PPP1R27Q86WC6 154 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 ICE1Q9Y2F5 2266 aa9.02□□□□□ -0.97
USP4-205ENST00000431357 OTOGLQ3ZCN5 2332 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 SERTM2A0A1B0GWG4 89 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 VWC2LB2RUY7 222 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 M0QZ24 198 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 FAM87AP0C7U9 286 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 RNASEKQ6P5S7 137 aaKnown RBP9.01□□□□□ -0.97
USP4-205ENST00000431357 Q6ZN92 141 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 RBPMS2Q6ZRY4 209 aaKnown RBP9.01□□□□□ -0.97
USP4-205ENST00000431357 CHCHD1Q96BP2 118 aaKnown RBP9.01□□□□□ -0.97
USP4-205ENST00000431357 TRAV9-2A0A087WT02 112 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 TEX22C9J3V5 150 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 BUB1B-PAK6H3BSN5 160 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 GPR6P46095 362 aaPredicted RBP9.01□□□□□ -0.97
USP4-205ENST00000431357 ASPHD1Q5U4P2 390 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 RUSC1-AS1Q66K80 236 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 SSBP4Q9BWG4 385 aaPredicted RBP9.01□□□□□ -0.97
USP4-205ENST00000431357 WNT10AQ9GZT5 417 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 C1RLQ9NZP8 487 aa9.01□□□□□ -0.97
USP4-205ENST00000431357 NPIPB6E9PJ23 425 aa9□□□□□ -0.97
USP4-205ENST00000431357 IGLC1P0CG04 106 aa9□□□□□ -0.97
USP4-205ENST00000431357 CNTFRP26992 372 aa9□□□□□ -0.97
USP4-205ENST00000431357 S100A7P31151 101 aa9□□□□□ -0.97
USP4-205ENST00000431357 ABHD17AQ96GS6 310 aa9□□□□□ -0.97
USP4-205ENST00000431357 C2orf70A6NJV1 201 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 PSG1P11464 419 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 LYZP61626 148 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 EBLN2Q6P2I7 272 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 LINC00322Q6ZN03 302 aaPredicted RBP8.99□□□□□ -0.97
USP4-205ENST00000431357 Q86TA4 180 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 PRSS33Q8NF86 280 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 GTSF1Q8WW33 167 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 SGK494Q96LW2 274 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 SLC25A39Q9BZJ4 359 aaPredicted RBP8.99□□□□□ -0.97
USP4-205ENST00000431357 I3L2K1 104 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 CD3EP07766 207 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 HOXB4P17483 251 aaPredicted RBP8.99□□□□□ -0.97
USP4-205ENST00000431357 WFDC12Q8WWY7 111 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 SRSF12Q8WXF0 261 aaKnown RBP8.99□□□□□ -0.97
USP4-205ENST00000431357 RPEQ96AT9 228 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 PGLYRP4Q96LB8 373 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 RASL11BQ9BPW5 248 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 NDFIP1Q9BT67 221 aa8.99□□□□□ -0.97
USP4-205ENST00000431357 TMEM70Q9BUB7 260 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms