RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 KISS1Q15726 138 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 C6orf99Q4VX62 202 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF322Q6U7Q0 402 aaPredicted RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 GID4Q8IVV7 300 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 OR2T35Q8NGX2 323 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 OR13C6PQ8NH95 151 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 LSM10Q969L4 123 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 RNF2Q99496 336 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 NRTNQ99748 197 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 DPCDQ9BVM2 203 aaPredicted RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 SLC25A39Q9BZJ4 359 aaPredicted RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 WARS2Q9UGM6 360 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 OPN4Q9UHM6 478 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 LGALS13Q9UHV8 139 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 LOXHD1Q8IVV2 1947 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 DSCAML1Q8TD84 2053 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 COL4A4P53420 1690 aaPredicted RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 TRBV5-7A0A0A0MS05 114 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 TRAV12-3A0A0B4J271 114 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 RND2P52198 227 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 TAS2R45P59539 299 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 DEFA5Q01523 94 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 DGUOKQ16854 277 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 LINC00114Q6XXX2 140 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 SPACA4Q8TDM5 124 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 SLC35B4Q969S0 331 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 RNF185Q96GF1 192 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 C2orf48Q96LS8 159 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 FGFBP2Q9BYJ0 223 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 GEMIN7Q9H840 131 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 EXOSC3Q9NQT5 275 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 TMA7Q9Y2S6 64 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 DNAH6Q9C0G6 4158 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 LAMB2P55268 1798 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 YLPM1P49750 1951 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 BRCA1P38398 1863 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 FOCADQ5VW36 1801 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 IGHV3-73A0A0B4J1V6 119 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 LAMP1P11279 417 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 GALP22466 123 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 ETV6P41212 452 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 EIF4EBP1Q13541 118 aaPredicted RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF876PQ49A33 203 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 C6orf226Q5I0X4 101 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 RIMKLAQ8IXN7 391 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 EBF4Q9BQW3 602 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 MRPL20Q9BYC9 149 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 NXF2Q9GZY0 626 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 DLEC1Q9Y238 1755 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 DNAH7Q8WXX0 4024 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 NLRC5Q86WI3 1866 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF254O75437 659 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 HLA-DRB1P01911 266 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 FAUP35544 74 aaKnown RBP1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 DIAPH2-AS1Q14236 149 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 BATFQ16520 125 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 NHLRC3Q5JS37 347 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 RASL11AQ6T310 242 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 SAMD12Q8N8I0 201 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 GPR148Q8TDV2 347 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 TMEM242Q9NWH2 141 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 ANAPC10Q9UM13 185 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 PDZD2O15018 2839 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 NIPBLQ6KC79 2804 aaeCLIP1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 TRAV8-4A0A0B4J246 113 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 IGKV1-6A0A0C4DH72 117 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 SULT1B1O43704 296 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 CDS2O95674 445 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 SOD1P00441 154 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 IGLV3-1P01715 115 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 P01737 135 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 AMY1AP04745 511 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 OR2T7P0C7T2 308 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 TGFBR1P36897 503 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 SSX1Q16384 188 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 DGAT2L6Q6ZPD8 337 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 BPIFA4PQ86YQ2 179 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 Q8N9W7 124 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 KCNG3Q8TAE7 436 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 RNF125Q96EQ8 232 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 SFRP2Q96HF1 295 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 Q9H3A6 140 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 VAX2Q9UIW0 290 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 JPT1Q9UK76 154 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 U3KQV3 271 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 ARL2-SNX15V9GYD0 113 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 MGAQ8IWI9 3026 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 TRAV8-2A0A0B4J237 113 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 IGHV3-16A0A0C4DH30 117 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM90A18PA6NE21 464 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM90A9PA6NNJ1 464 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 ARL6IP5O75915 188 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 C1QCP02747 245 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF133P52736 654 aaPredicted RBP1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 KLF9Q13886 244 aaPredicted RBP1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 C18orf21Q32NC0 220 aaPredicted RBP1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 LSMEM1Q8N8F7 131 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 C9orf163Q8N9P6 203 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 OR5A1Q8NGJ0 315 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 CTDSP1Q9GZU7 261 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms