RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PSMB3P49720 205 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 TMEM182Q6ZP80 229 aaPredicted RBP8.25□□□□□ -1.09
USP4-204ENST00000416417 FOXI2Q6ZQN5 318 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 OR8I2Q8N0Y5 310 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 C1orf158Q8N1D5 194 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 C17orf77Q96MU5 243 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 SCGB3A2Q96PL1 93 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 SLC25A32Q9H2D1 315 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 SLC25A22Q9H936 323 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 DNAH17Q9UFH2 4485 aa8.25□□□□□ -1.09
USP4-204ENST00000416417 A0A1B0GVY2 172 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 SNRPGP15A8MWD9 76 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 WRBO00258 174 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 TMBIM6P55061 237 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 ZNF79Q15937 498 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 PYDC2Q56P42 97 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 MCFD2Q8NI22 146 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 NEU1Q99519 415 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 DKK2Q9UBU2 259 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 CACFD1Q9UGQ2 172 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 RFNGQ9Y644 331 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 A0A0J9YX75 114 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 H3BP45 60 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 HOXB5P09067 269 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 P0DMU3 169 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 FAM231AP0DMU4 169 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 FAM231CP0DMU5 169 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 SRPXP78539 464 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 PSG9Q00887 426 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 EBLN2Q6P2I7 272 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 TRIM63Q969Q1 353 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 C16orf92Q96LL3 132 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 TRGV9Q99603 122 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 C7orf50Q9BRJ6 194 aaKnown RBP8.24□□□□□ -1.09
USP4-204ENST00000416417 RSG1Q9BU20 258 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 DOK5Q9P104 306 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 RABL2AQ9UBK7 228 aaPredicted RBP8.24□□□□□ -1.09
USP4-204ENST00000416417 RABL2BQ9UNT1 228 aa8.24□□□□□ -1.09
USP4-204ENST00000416417 LOC102723971A0A1B0GUV8 181 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 PRSS29PA6NIE9 313 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 PRSS46E5RG02 174 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 ORM2P19652 201 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 NUP62P37198 522 aaPredicted RBP8.23□□□□□ -1.09
USP4-204ENST00000416417 RAB11AP62491 216 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 PPP1R1AQ13522 171 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 SPANXN5Q5MJ07 72 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 C1orf194Q5T5A4 169 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 UBE2DNLQ8IWF7 75 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 TOMM5Q8N4H5 51 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 THAP8Q8NA92 274 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 NIPSNAP3BQ9BS92 247 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 PFDN2Q9UHV9 154 aa8.23□□□□□ -1.09
USP4-204ENST00000416417 YTHDF2Q9Y5A9 579 aaKnown RBP8.23□□□□□ -1.09
USP4-204ENST00000416417 SMIM9A6NGZ8 99 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 ZNF98A6NK75 572 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 ISLRO14498 428 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 NOL3O60936 208 aaKnown RBP8.22□□□□□ -1.09
USP4-204ENST00000416417 SFT2D2O95562 160 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 FABP1P07148 127 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 TMEM128Q5BJH2 165 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 LINC00336Q6ZUF6 198 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 RNF182Q8N6D2 247 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 GOLT1BQ9Y3E0 138 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 V9GYH0 126 aa8.22□□□□□ -1.09
USP4-204ENST00000416417 TMEM189A5PLL7 270 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 ZNF705GA8MUZ8 300 aaPredicted RBP8.21□□□□□ -1.1
USP4-204ENST00000416417 M0R2Z0 102 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 SYNGR2O43760 224 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 ADAP1O75689 374 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 HBE1P02100 147 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 PAX9P55771 341 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 ATP5IP56385 69 aaPredicted RBP8.21□□□□□ -1.1
USP4-204ENST00000416417 FGL1Q08830 312 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 GGNBP1Q5YKI7 109 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 AMTNQ6UX39 209 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 OR1B1Q8NGR6 318 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 RPRMQ9NS64 109 aa8.21□□□□□ -1.1
USP4-204ENST00000416417 TRAV8-2A0A0B4J237 113 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 DUXBA0A1W2PPF3 345 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 SMCO3A2RU48 225 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 CCNKO75909 580 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 IFNA21P01568 189 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 FAUP35544 74 aaKnown RBP8.2□□□□□ -1.1
USP4-204ENST00000416417 GALR1P47211 349 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 AKR1C1Q04828 323 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 SPINK13Q1W4C9 94 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 RRN3P1Q2M238 152 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 TMEM88Q6PEY1 159 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 ACOT7LQ6ZUV0 252 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 LRTM2Q8N967 370 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 CLUHP3Q96NS8 147 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 BCL7BQ9BQE9 202 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 TMEM208Q9BTX3 173 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 PKHD1P08F94 4074 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 PKD1P98161 4303 aa8.2□□□□□ -1.1
USP4-204ENST00000416417 DYNC1H1Q14204 4646 aaKnown RBP8.19□□□□□ -1.1
USP4-204ENST00000416417 TRAV12-2A0A075B6T6 113 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 MED6O75586 246 aa8.19□□□□□ -1.1
USP4-204ENST00000416417 CNN1P51911 297 aaKnown RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms