RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 NEU4Q8WWR8 484 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 Q9H3A6 140 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 FAM215AQ9Y5M1 114 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 CEP290O15078 2479 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 C17orf100A8MU93 164 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 SHISA9B4DS77 424 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 TMEM178BH3BS89 294 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 HINT1P49773 126 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 RIGQ13278 110 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 PDE6HQ13956 83 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 DUX4L9Q6RFH8 374 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 UNQ5815/PRO19632Q6UWF5 114 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 DHRS13Q6UX07 377 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 S100A7AQ86SG5 101 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 RNASE8Q8TDE3 154 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 F11RQ9Y624 299 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 FCN3O75636 299 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 IGHV3-7P01780 117 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 ATP1A1-AS1Q5TC04 95 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 LINC00322Q6ZN03 302 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 TCF24Q7RTU0 167 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 DAZAP1Q96EP5 407 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 MRPL36Q9P0J6 103 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 HIGD1AQ9Y241 93 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 SDK1Q7Z5N4 2213 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 TNCP24821 2201 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 PPIAL4EA0A075B759 164 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 TRAV34A0A0B4J273 112 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 A0A1B0GUT8 65 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 PPIAL4DF5H284 164 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 IGLV1-47P01700 117 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 IGLC1P0CG04 106 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 PPIAL4FP0DN26 164 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 COL8A2P25067 703 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 CSN1S1P47710 185 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 LGALS9BQ3B8N2 356 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 LGALS9CQ6DKI2 356 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 Q6ZS92 163 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 RPRMLQ8N4K4 120 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 KIR3DL3Q8N743 410 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 GUCD1Q96NT3 240 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 ZNF747Q9BV97 191 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 JKAMPQ9P055 326 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 PPIAL4AQ9Y536 164 aa4.57□□□□□ -1.68
CCDC88A-203ENST00000412148 I3L2K1 104 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 J3QL48 77 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 CHEK1O14757 476 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 NDUFB3O43676 98 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 FAM87AP0C7U9 286 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 CT45A10P0DMU9 189 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 LOXP28300 417 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 RPL27AP46776 148 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 GNG5P63218 68 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 FAM201AQ5SY85 155 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 TMEM108Q6UXF1 575 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 CIARTQ8N365 385 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 ZADH2Q8N4Q0 377 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 OR10AG1Q8NH19 301 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 IGFBPL1Q8WX77 278 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 SHANK2-AS3Q9BTD1 123 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 SSBP4Q9BWG4 385 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 PEF1Q9UBV8 284 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 TRBV19A0A075B6N1 114 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 SH2D7A6NKC9 451 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 ZNF785A8K8V0 405 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 TEX22C9J3V5 150 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 H3BRN7 92 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 K7EQM0 130 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 MRPS12O15235 138 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 IGHV1-8P0DP01 117 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 HLA-DRB4P13762 266 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 GPR6P46095 362 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 CAMPP49913 170 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 PAX8Q06710 450 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 MPV17L2Q567V2 206 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 OR4C5Q8NGB2 326 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 OR9G4Q8NGQ1 327 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 RND1Q92730 232 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 SCNM1Q9BWG6 230 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 SLC25A39Q9BZJ4 359 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 AP5S1Q9NUS5 200 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 CLEC5AQ9NY25 188 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 SIGLEC9Q9Y336 463 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 HLA-DRB4X5D2U9 266 aa4.56□□□□□ -1.68
CCDC88A-203ENST00000412148 NKX2-8O15522 239 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 FGF6P10767 208 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 WT1P19544 449 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 COL8A1P27658 744 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 ADIPOQQ15848 244 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 KLK9Q2XQG4 91 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 C2orf91Q6ZV80 131 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 ATOH7Q8N100 152 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 OR1B1Q8NGR6 318 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 FAM57AQ8TBR7 257 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 TMEM133Q9H2Q1 129 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 ZMAT4Q9H898 229 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 KLK9Q9UKQ9 250 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 WI2-2373I1.2A0A1W2PRP0 233 aa4.55□□□□□ -1.68
CCDC88A-203ENST00000412148 APOBEC3AP31941 199 aaPredicted RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms