RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 RRAS2P62070 204 aaPredicted RBP13.86□□□□□ -0.19
SF3A1-202ENST00000411423 AKR1C1Q04828 323 aa13.86□□□□□ -0.19
SF3A1-202ENST00000411423 TMEM144Q7Z5S9 345 aa13.86□□□□□ -0.19
SF3A1-202ENST00000411423 CSNK1G2-AS1Q8NCQ2 148 aa13.86□□□□□ -0.19
SF3A1-202ENST00000411423 CXorf65A6NEN9 183 aa13.85□□□□□ -0.19
SF3A1-202ENST00000411423 H3BMM0 161 aa13.85□□□□□ -0.19
SF3A1-202ENST00000411423 FABP1P07148 127 aa13.85□□□□□ -0.19
SF3A1-202ENST00000411423 ATF4P18848 351 aaPredicted RBP13.85□□□□□ -0.19
SF3A1-202ENST00000411423 IFITM3Q01628 133 aa13.85□□□□□ -0.19
SF3A1-202ENST00000411423 C1orf194Q5T5A4 169 aa13.85□□□□□ -0.19
SF3A1-202ENST00000411423 ZNF431Q8TF32 576 aaPredicted RBP13.85□□□□□ -0.19
SF3A1-202ENST00000411423 SLC25A32Q9H2D1 315 aa13.85□□□□□ -0.19
SF3A1-202ENST00000411423 SEPSECSQ9HD40 501 aaKnown RBP13.85□□□□□ -0.19
SF3A1-202ENST00000411423 SMCO3A2RU48 225 aa13.84□□□□□ -0.19
SF3A1-202ENST00000411423 C7orf66A4D0T2 115 aa13.84□□□□□ -0.19
SF3A1-202ENST00000411423 H2AFB2P0C5Z0 115 aa13.84□□□□□ -0.19
SF3A1-202ENST00000411423 SPP1P10451 314 aa13.84□□□□□ -0.19
SF3A1-202ENST00000411423 ORM2P19652 201 aa13.84□□□□□ -0.19
SF3A1-202ENST00000411423 NUP62P37198 522 aaPredicted RBP13.84□□□□□ -0.19
SF3A1-202ENST00000411423 MORN3Q6PF18 240 aaPredicted RBP13.84□□□□□ -0.19
SF3A1-202ENST00000411423 CYP2G1PQ6ZSU1 146 aa13.84□□□□□ -0.19
SF3A1-202ENST00000411423 Q8NAQ8 132 aa13.84□□□□□ -0.19
SF3A1-202ENST00000411423 C11orf68Q9H3H3 251 aaKnown RBP13.84□□□□□ -0.19
SF3A1-202ENST00000411423 C11orf1Q9H5F2 150 aa13.84□□□□□ -0.19
SF3A1-202ENST00000411423 X6R8D5 127 aa13.84□□□□□ -0.19
SF3A1-202ENST00000411423 ZNF98A6NK75 572 aa13.83□□□□□ -0.2
SF3A1-202ENST00000411423 RBMY1A1P0DJD3 496 aaKnown RBP13.83□□□□□ -0.2
SF3A1-202ENST00000411423 RBMY1CP0DJD4 496 aa13.83□□□□□ -0.2
SF3A1-202ENST00000411423 SNRPD3P62318 126 aaKnown RBP13.83□□□□□ -0.2
SF3A1-202ENST00000411423 RBMY1FQ15415 496 aaKnown RBP13.83□□□□□ -0.2
SF3A1-202ENST00000411423 PPP1R14BQ96C90 147 aa13.83□□□□□ -0.2
SF3A1-202ENST00000411423 C20orf173Q96LM9 149 aa13.83□□□□□ -0.2
SF3A1-202ENST00000411423 DOK5Q9P104 306 aa13.83□□□□□ -0.2
SF3A1-202ENST00000411423 K7EPK0 472 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 TSC22D2O75157 780 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 HLA-DRB4P13762 266 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 TAS2R30P59541 319 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 NANOS2P60321 138 aaKnown RBP13.82□□□□□ -0.2
SF3A1-202ENST00000411423 DLK1P80370 383 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 ASAH1Q13510 395 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 CEMP1Q6PRD7 247 aaPredicted RBP13.82□□□□□ -0.2
SF3A1-202ENST00000411423 OR8I2Q8N0Y5 310 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 BPIFCQ8NFQ6 507 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 OR1B1Q8NGR6 318 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 S100ZQ8WXG8 99 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 LINC00052Q96N35 136 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 SCRT1Q9BWW7 348 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 SLC25A22Q9H936 323 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 FBXL17Q9UF56 701 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 HLA-DRB4X5D2U9 266 aa13.82□□□□□ -0.2
SF3A1-202ENST00000411423 FAM240BA0A1B0GVZ2 78 aa13.81□□□□□ -0.2
SF3A1-202ENST00000411423 ZNF705EA8MWA4 302 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-202ENST00000411423 FAM25EA8MYX2 175 aa13.81□□□□□ -0.2
SF3A1-202ENST00000411423 F6UB75 175 aa13.81□□□□□ -0.2
SF3A1-202ENST00000411423 CFDP00746 253 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-202ENST00000411423 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.81□□□□□ -0.2
SF3A1-202ENST00000411423 C12orf45Q8N5I9 185 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-202ENST00000411423 PFDN2Q9UHV9 154 aa13.81□□□□□ -0.2
SF3A1-202ENST00000411423 SLC45A2Q9UMX9 530 aa13.81□□□□□ -0.2
SF3A1-202ENST00000411423 LSM5Q9Y4Y9 91 aaKnown RBP13.81□□□□□ -0.2
SF3A1-202ENST00000411423 IGHV4-28A0A0C4DH34 117 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 H3BRN7 92 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 IGKV3-20P01619 116 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 PSMB3P49720 205 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 SLC38A11Q08AI6 406 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 IL15RAQ13261 267 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 PATE2Q6UY27 113 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 TMEM217Q8N7C4 229 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 OR10P1Q8NGE3 313 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 PHLDA1Q8WV24 401 aaPredicted RBP13.8□□□□□ -0.2
SF3A1-202ENST00000411423 SAV1Q9H4B6 383 aaPredicted RBP13.8□□□□□ -0.2
SF3A1-202ENST00000411423 BATF3Q9NR55 127 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 XCL2Q9UBD3 114 aa13.8□□□□□ -0.2
SF3A1-202ENST00000411423 C5orf51A6NDU8 294 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 NUPR2A6NF83 97 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 UPK1BO75841 260 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 JTBO76095 146 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 IL5P05113 134 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 FXYD7P58549 80 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 PLP1P60201 277 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 IGFL4Q6B9Z1 124 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 UHRF2Q96PU4 802 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 RSG1Q9BU20 258 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 TMEM147Q9BVK8 224 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 SLC25A39Q9BZJ4 359 aaPredicted RBP13.79□□□□□ -0.2
SF3A1-202ENST00000411423 NPVFQ9HCQ7 196 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 PTTG2Q9NZH5 202 aa13.79□□□□□ -0.2
SF3A1-202ENST00000411423 ELOA3CA0A087WX78 387 aaPredicted RBP13.78□□□□□ -0.2
SF3A1-202ENST00000411423 TRAV8-2A0A0B4J237 113 aa13.78□□□□□ -0.2
SF3A1-202ENST00000411423 FNDC10F2Z333 226 aa13.78□□□□□ -0.2
SF3A1-202ENST00000411423 LINC00869P0C866 280 aa13.78□□□□□ -0.2
SF3A1-202ENST00000411423 TMEM41BQ5BJD5 291 aa13.78□□□□□ -0.2
SF3A1-202ENST00000411423 C11orf45Q8TAV5 145 aa13.78□□□□□ -0.2
SF3A1-202ENST00000411423 C2orf50Q96LR7 162 aa13.78□□□□□ -0.2
SF3A1-202ENST00000411423 SHANK2-AS3Q9BTD1 123 aa13.78□□□□□ -0.2
SF3A1-202ENST00000411423 VPS13DQ5THJ4 4388 aa13.78□□□□□ -0.2
SF3A1-202ENST00000411423 FAM24AA6NFZ4 105 aa13.77□□□□□ -0.21
SF3A1-202ENST00000411423 ISLRO14498 428 aa13.77□□□□□ -0.21
SF3A1-202ENST00000411423 ZNF846Q147U1 533 aa13.77□□□□□ -0.21
SF3A1-202ENST00000411423 MZT2BQ6NZ67 158 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms