RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 GPHA2Q96T91 129 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 ZNF638Q14966 1978 aaKnown RBP4.99□□□□□ -1.61
SCN1A-203ENST00000409050 GREB1LQ9C091 1923 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-203ENST00000409050 Q6P435 159 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 ST6GALNAC6Q969X2 333 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 ZNF236Q9UL36 1845 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 TIAF1O95411 115 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 TBX6O95947 436 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-203ENST00000409050 IGKV1-5P01602 117 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 ZNF876PQ49A33 203 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 ZNF329Q86UD4 541 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 AMN1Q8IY45 258 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 EDA2RQ9HAV5 297 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 TRAV13-2A0A0B4J235 113 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 C9orf118A6NHY6 69 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 RAMP3O60896 148 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 RNASE2P10153 161 aaKnown RBP4.99□□□□□ -1.61
SCN1A-203ENST00000409050 PRTN3P24158 256 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 CD300EQ496F6 205 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-203ENST00000409050 LINC01560Q8TB33 94 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 UBE2WQ96B02 151 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 SPXQ9BT56 116 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 UBL5Q9BZL1 73 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 SIGLEC9Q9Y336 463 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 PAX4O43316 350 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 LCN12Q6JVE5 192 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 GGNQ86UU5 652 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 DAZ1Q9NQZ3 744 aaKnown RBP4.99□□□□□ -1.61
SCN1A-203ENST00000409050 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 C15orf62A8K5M9 175 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 SELLP14151 372 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 RIPPLY3P57055 190 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 TFF2Q03403 129 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 LIME1Q9H400 295 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 PNRC2Q9NPJ4 139 aaKnown RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 LAMTOR3Q9UHA4 124 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 PCM1Q15154 2024 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 SCN10AQ9Y5Y9 1956 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 IGKV1-12A0A0C4DH73 117 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 A8MWP6 167 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 BUB1B-PAK6H3BSN5 160 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 J3QLI3 93 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 IGKV1D-12P01611 117 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 PFN1P07737 140 aaKnown RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 SNRPCP09234 159 aaKnown RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 SPINK2P20155 84 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 CFHR2P36980 270 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 FAM104BQ5XKR9 115 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 Q6ZVH6 145 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 VMO1Q7Z5L0 202 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 URB1O60287 2271 aaKnown RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 TGFAP01135 160 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 IGHG4P01861 327 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 HGFACQ04756 655 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 C15orf32Q32M92 178 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 ZC2HC1BQ5TFG8 222 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 WIPF2Q8TF74 440 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 DMRTA2Q96SC8 542 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 SDK1Q7Z5N4 2213 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 GAGE12BA1L429 117 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 PMS2P5A8MQ11 134 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 POU2AF1Q16633 256 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 ZNF672Q499Z4 452 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 C6orf226Q5I0X4 101 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 GLRX5Q86SX6 157 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 RNF152Q8N8N0 203 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 MCRIP2Q9BUT9 160 aaKnown RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 F5P12259 2224 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 GATA2P23769 480 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 SRSF3P84103 164 aaKnown RBP4.98□□□□□ -1.61
SCN1A-203ENST00000409050 TMEM200BQ69YZ2 307 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 ATP6V0BQ99437 205 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 CSTL1Q9H114 145 aa4.98□□□□□ -1.61
SCN1A-203ENST00000409050 I3L3M4 83 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 IGKV3-20P01619 116 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 SPINK8P0C7L1 97 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 TMEM158Q8WZ71 300 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 IGHV1-69DA0A0B4J2H0 117 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 NPIPB5A8MRT5 1133 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 K7EM74 188 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 SNAI2O43623 268 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 COX8AP10176 69 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 HOXD3P31249 432 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-203ENST00000409050 TMEM258P61165 79 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 RHOHQ15669 191 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 GLMPQ8WWB7 406 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 RBAKDNA6NC62 111 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 CELA3AP09093 270 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 MUC21Q5SSG8 566 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 BMPERQ8N8U9 685 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 GATD1Q8NB37 220 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 MDS2Q8NDY4 140 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 GAFA1Q96PS6 74 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 TMEM14BQ9NUH8 114 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 PATJQ8NI35 1801 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 TEX48A0A1B0GUV7 120 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 K7EP34 96 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 HLA-DMBP28068 263 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 LHFPL4Q7Z7J7 247 aa4.97□□□□□ -1.61
SCN1A-203ENST00000409050 NINQ8N4C6 2090 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms