RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 DLX1P56177 255 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 ETFRF1Q6IPR1 90 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 TMEM116Q8NCL8 245 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 OR4F17Q8NGA8 305 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 COL25A1Q9BXS0 654 aaPredicted RBP10.15□□□□□ -0.78
SHMT1-205ENST00000395684 Q9H3A6 140 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 ABCA1O95477 2261 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 PKDREJQ9NTG1 2253 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 A8MWL6 223 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 P01737 135 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 MC5RP33032 325 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 LINC00173Q6ZV60 143 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 C5orf17Q8NAS9 161 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 FAM57AQ8TBR7 257 aa10.15□□□□□ -0.78
SHMT1-205ENST00000395684 C16orf97H3BN30 126 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 THBDP07204 575 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 IGHV1-8P0DP01 117 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 LGALS7P47929 136 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 PRB3Q04118 309 aaPredicted RBP10.14□□□□□ -0.79
SHMT1-205ENST00000395684 Q71RC1 249 aaPredicted RBP10.14□□□□□ -0.79
SHMT1-205ENST00000395684 FMC1Q96HJ9 113 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 TMEM70Q9BUB7 260 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 TP73-AS1Q9UF72 201 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 SPTBN4Q9H254 2564 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 TRAV8-1A0A0A6YYK1 113 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 A0A0G2JNJ9 132 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 SFTPCP11686 197 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 TMEM155Q4W5P6 130 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 CT83Q5H943 113 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 UNQ5815/PRO19632Q6UWF5 114 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 C8orf46Q8TAG6 207 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 Q9UFV3 132 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 ZNF835Q9Y2P0 537 aa10.14□□□□□ -0.79
SHMT1-205ENST00000395684 RPL27AP46776 148 aaKnown RBP10.13□□□□□ -0.79
SHMT1-205ENST00000395684 ZNF492Q9P255 531 aa10.13□□□□□ -0.79
SHMT1-205ENST00000395684 IGHV1-24A0A0C4DH33 117 aa10.13□□□□□ -0.79
SHMT1-205ENST00000395684 C20orf202A1L168 122 aa10.13□□□□□ -0.79
SHMT1-205ENST00000395684 CCL25O15444 150 aa10.13□□□□□ -0.79
SHMT1-205ENST00000395684 CRXO43186 299 aaPredicted RBP10.13□□□□□ -0.79
SHMT1-205ENST00000395684 CRYGBP07316 175 aa10.13□□□□□ -0.79
SHMT1-205ENST00000395684 TEX45Q8NA69 505 aa10.13□□□□□ -0.79
SHMT1-205ENST00000395684 PRSS33Q8NF86 280 aa10.13□□□□□ -0.79
SHMT1-205ENST00000395684 ORAOV1Q8WV07 137 aa10.13□□□□□ -0.79
SHMT1-205ENST00000395684 PLP1P60201 277 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 CIARTQ8N365 385 aaPredicted RBP10.12□□□□□ -0.79
SHMT1-205ENST00000395684 ATMQ13315 3056 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 AKAP13Q12802 2813 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 OR4C46A6NHA9 309 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 IGF2-ASQ6U949 168 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 RBPMS2Q6ZRY4 209 aaKnown RBP10.12□□□□□ -0.79
SHMT1-205ENST00000395684 MUC15Q8N387 334 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 C22orf15Q8WYQ4 148 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 DAZAP1Q96EP5 407 aaKnown RBP10.12□□□□□ -0.79
SHMT1-205ENST00000395684 TMEM133Q9H2Q1 129 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 SIGLEC9Q9Y336 463 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 ZZEF1O43149 2961 aa10.12□□□□□ -0.79
SHMT1-205ENST00000395684 NPIPB6E9PJ23 425 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 IGLV2-11P01706 119 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 PSG1P11464 419 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 ZNF138P52744 262 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 EXOC3-AS1Q8N2X6 119 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 GFRA4Q9GZZ7 299 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 SOX21Q9Y651 276 aaPredicted RBP10.11□□□□□ -0.79
SHMT1-205ENST00000395684 ZNF785A8K8V0 405 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 SYS1-DBNDD2H3BUS1 97 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 OVOL3O00110 214 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 TOX4O94842 621 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 ASCL5Q7RTU5 278 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 RNASE6Q93091 150 aaKnown RBP10.11□□□□□ -0.79
SHMT1-205ENST00000395684 CHCHD1Q96BP2 118 aaKnown RBP10.11□□□□□ -0.79
SHMT1-205ENST00000395684 KAAG1Q9UBP8 84 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 COX11Q9Y6N1 276 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 PCNX1Q96RV3 2341 aa10.11□□□□□ -0.79
SHMT1-205ENST00000395684 LOC102724200A0A096LPH7 203 aaPredicted RBP10.1□□□□□ -0.79
SHMT1-205ENST00000395684 TEX22C9J3V5 150 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 LEPROTL1O95214 131 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 APOHP02749 345 aaPredicted RBP10.1□□□□□ -0.79
SHMT1-205ENST00000395684 LYZP61626 148 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 Q86TA4 180 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 HIGD1AQ9Y241 93 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 F11RQ9Y624 299 aaKnown RBP10.1□□□□□ -0.79
SHMT1-205ENST00000395684 CEP295Q9C0D2 2601 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 hDV102S1A0JD36 115 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 IGLC1P0CG04 106 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 PRB4P10163 310 aaPredicted RBP10.1□□□□□ -0.79
SHMT1-205ENST00000395684 COL8A1P27658 744 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 PTTG1IPP53801 180 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 FAM162BQ5T6X4 162 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 NDFIP1Q9BT67 221 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 SLC25A39Q9BZJ4 359 aaPredicted RBP10.1□□□□□ -0.79
SHMT1-205ENST00000395684 GOLT1AQ6ZVE7 132 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 PRNTQ86SH4 94 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 PPP1R27Q86WC6 154 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 C1RLQ9NZP8 487 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 SH3BGRL2Q9UJC5 107 aa10.1□□□□□ -0.79
SHMT1-205ENST00000395684 IGHV1-69-2A0A0G2JMI3 117 aa10.09□□□□□ -0.79
SHMT1-205ENST00000395684 FAM231BA6NCW3 169 aa10.09□□□□□ -0.79
SHMT1-205ENST00000395684 CHEK1O14757 476 aa10.09□□□□□ -0.79
SHMT1-205ENST00000395684 IGLV1-47P01700 117 aa10.09□□□□□ -0.79
SHMT1-205ENST00000395684 ASCL2Q99929 193 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms