RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 H1FXQ92522 213 aaKnown RBP16.93■□□□□ 0.3
UPF3A-202ENST00000375299 H3BTX0 84 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 HAX1O00165 279 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 ZNF138P52744 262 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 Q86TA4 180 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 DEFB124Q8NES8 71 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 TPSG1Q9NRR2 321 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 SPAARA0A1B0GVQ0 90 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 CBY3A6NI87 242 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 SLC25A17O43808 307 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 APOHP02749 345 aaPredicted RBP16.92■□□□□ 0.3
UPF3A-202ENST00000375299 FAM87AP0C7U9 286 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 FTH1P19P0C7X4 201 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 HIST1H1AQ02539 215 aaPredicted RBP16.92■□□□□ 0.3
UPF3A-202ENST00000375299 VMA21Q3ZAQ7 101 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 TMEM186Q96B77 213 aa16.92■□□□□ 0.3
UPF3A-202ENST00000375299 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.91■□□□□ 0.3
UPF3A-202ENST00000375299 TOX4O94842 621 aa16.91■□□□□ 0.3
UPF3A-202ENST00000375299 PSG1P11464 419 aa16.91■□□□□ 0.3
UPF3A-202ENST00000375299 COL8A1P27658 744 aa16.91■□□□□ 0.3
UPF3A-202ENST00000375299 MCRIP2Q9BUT9 160 aaKnown RBP16.91■□□□□ 0.3
UPF3A-202ENST00000375299 TMUB1Q9BVT8 246 aa16.91■□□□□ 0.3
UPF3A-202ENST00000375299 CST9LQ9H4G1 147 aa16.91■□□□□ 0.3
UPF3A-202ENST00000375299 HCP5Q6MZN7 132 aa16.91■□□□□ 0.3
UPF3A-202ENST00000375299 CD5LO43866 347 aa16.9■□□□□ 0.3
UPF3A-202ENST00000375299 DEFB109BQ30KR1 87 aa16.9■□□□□ 0.3
UPF3A-202ENST00000375299 TMEM200BQ69YZ2 307 aa16.9■□□□□ 0.3
UPF3A-202ENST00000375299 PVRIGQ6DKI7 326 aa16.9■□□□□ 0.3
UPF3A-202ENST00000375299 H0Y8G0 127 aa16.89■□□□□ 0.3
UPF3A-202ENST00000375299 MRGPRG-AS1Q2M3A8 158 aa16.89■□□□□ 0.3
UPF3A-202ENST00000375299 LDLRAD2Q5SZI1 272 aa16.89■□□□□ 0.3
UPF3A-202ENST00000375299 LINC01545Q5VT33 79 aa16.89■□□□□ 0.3
UPF3A-202ENST00000375299 AMMECR1LQ6DCA0 310 aa16.89■□□□□ 0.3
UPF3A-202ENST00000375299 CIARTQ8N365 385 aaPredicted RBP16.89■□□□□ 0.3
UPF3A-202ENST00000375299 RNF24Q9Y225 148 aa16.89■□□□□ 0.3
UPF3A-202ENST00000375299 ICE1Q9Y2F5 2266 aa16.89■□□□□ 0.29
UPF3A-202ENST00000375299 LINC00311Q8N616 119 aa16.89■□□□□ 0.29
UPF3A-202ENST00000375299 C8orf46Q8TAG6 207 aa16.89■□□□□ 0.29
UPF3A-202ENST00000375299 A0A087X0K7 114 aa16.88■□□□□ 0.29
UPF3A-202ENST00000375299 FCN3O75636 299 aa16.88■□□□□ 0.29
UPF3A-202ENST00000375299 HTR1DP28221 377 aa16.88■□□□□ 0.29
UPF3A-202ENST00000375299 PLP1P60201 277 aa16.88■□□□□ 0.29
UPF3A-202ENST00000375299 C16orf54Q6UWD8 224 aa16.88■□□□□ 0.29
UPF3A-202ENST00000375299 TMEM116Q8NCL8 245 aa16.88■□□□□ 0.29
UPF3A-202ENST00000375299 OTORQ9NRC9 128 aa16.88■□□□□ 0.29
UPF3A-202ENST00000375299 TRAV8-1A0A0A6YYK1 113 aa16.88■□□□□ 0.29
UPF3A-202ENST00000375299 CSN3P07498 182 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 CCL8P80075 99 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 OCIAD2Q56VL3 154 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 NEU4Q8WWR8 484 aaPredicted RBP16.87■□□□□ 0.29
UPF3A-202ENST00000375299 RITA1Q96K30 269 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 OVOL3O00110 214 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 GPR183P32249 361 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 ARF6P62330 175 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 PSG9Q00887 426 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 C8orf31Q8N9H6 132 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 PMCHL2Q9BQD1 86 aa16.87■□□□□ 0.29
UPF3A-202ENST00000375299 IGHV3-21A0A0B4J1V1 117 aa16.86■□□□□ 0.29
UPF3A-202ENST00000375299 COX8AP10176 69 aa16.86■□□□□ 0.29
UPF3A-202ENST00000375299 PRNTQ86SH4 94 aa16.86■□□□□ 0.29
UPF3A-202ENST00000375299 TIMM8BQ9Y5J9 83 aaPredicted RBP16.86■□□□□ 0.29
UPF3A-202ENST00000375299 IGLV2-11P01706 119 aa16.86■□□□□ 0.29
UPF3A-202ENST00000375299 HIGD1AQ9Y241 93 aa16.86■□□□□ 0.29
UPF3A-202ENST00000375299 BOD1L1Q8NFC6 3051 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 TNFRSF1AP19438 455 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 MC5RP33032 325 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 RPRMLQ8N4K4 120 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 A0A1B0GUT8 65 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 PLXNB1O43157 2135 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 CEACAM4O75871 244 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 CD40P25942 277 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 C2orf91Q6ZV80 131 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 GOLT1AQ6ZVE7 132 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 Q71RC1 249 aaPredicted RBP16.85■□□□□ 0.29
UPF3A-202ENST00000375299 AP5S1Q9NUS5 200 aa16.85■□□□□ 0.29
UPF3A-202ENST00000375299 HOXB4P17483 251 aaPredicted RBP16.84■□□□□ 0.29
UPF3A-202ENST00000375299 RPL27AP46776 148 aaKnown RBP16.84■□□□□ 0.29
UPF3A-202ENST00000375299 LGALS7P47929 136 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 GATD1Q8NB37 220 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 VPS25Q9BRG1 176 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 ZNF747Q9BV97 191 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 PEF1Q9UBV8 284 aaKnown RBP16.84■□□□□ 0.29
UPF3A-202ENST00000375299 FAM215AQ9Y5M1 114 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 SVILO95425 2214 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 RIGQ13278 110 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 C22orf34Q6ZV56 151 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 ZADH2Q8N4Q0 377 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 TMEM14CQ9P0S9 112 aa16.84■□□□□ 0.29
UPF3A-202ENST00000375299 TRAV8-6A0A0B4J262 113 aa16.83■□□□□ 0.28
UPF3A-202ENST00000375299 TRBV6-1A0A0K0K1D8 114 aa16.83■□□□□ 0.28
UPF3A-202ENST00000375299 ENSAO43768 121 aaKnown RBP16.83■□□□□ 0.28
UPF3A-202ENST00000375299 ARMS2P0C7Q2 107 aa16.83■□□□□ 0.28
UPF3A-202ENST00000375299 EXOC3-AS1Q8N2X6 119 aa16.83■□□□□ 0.28
UPF3A-202ENST00000375299 PLCE1Q9P212 2302 aa16.83■□□□□ 0.28
UPF3A-202ENST00000375299 APELAP0DMC3 54 aa16.82■□□□□ 0.28
UPF3A-202ENST00000375299 LYZP61626 148 aa16.82■□□□□ 0.28
UPF3A-202ENST00000375299 PAX2Q02962 417 aa16.82■□□□□ 0.28
UPF3A-202ENST00000375299 BPIFA4PQ86YQ2 179 aa16.82■□□□□ 0.28
UPF3A-202ENST00000375299 TEX45Q8NA69 505 aa16.82■□□□□ 0.28
UPF3A-202ENST00000375299 NUP37Q8NFH4 326 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms