RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 DKK4Q9UBT3 224 aa7.19□□□□□ -1.26
SYNE1-206ENST00000367253 LINC00312Q9Y6C7 94 aa7.19□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A10PA6NDY2 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A18PA6NE21 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A16PA6NEW6 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A20PA6NIJ5 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A8PA6NJQ4 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A7PA6NKC0 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A22PA8MWA6 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A12PA8MX19 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A5PA8MXJ8 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A23PA8MXZ1 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 F8W1H4 67 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FSHBP01225 129 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 HLA-DQB1P01920 261 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A15PP0C7V4 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A13PP0C7W8 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A14PP0C7W9 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM90A24PP0C7X0 464 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 C5orf64Q2M2E5 130 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 SERTAD4-AS1Q5TG53 156 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 IGFL3Q6UXB1 125 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 TM2D2Q9BX73 214 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 K7EP34 96 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 TCTEX1D4Q5JR98 221 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 HEPN1Q6WQI6 88 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 OR51G1Q8NGK1 321 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 TMEM170AQ8WVE7 144 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 CTHRC1Q96CG8 243 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 CHCHD5Q9BSY4 110 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 SDF2L1Q9HCN8 221 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FABP5P3A8MUU1 101 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 UBE2E1P51965 193 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 TPRX1Q8N7U7 411 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 SMAD5-AS1Q9Y6J3 95 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 SCN5AQ14524 2016 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 PRB1P04280 392 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 H2BFSP57053 126 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 KIAA0040Q15053 153 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 OSR1Q8TAX0 266 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-206ENST00000367253 FAM110AQ9BQ89 295 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 SLC25A2Q9BXI2 301 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 MRPS18AQ9NVS2 196 aaKnown RBP7.18□□□□□ -1.26
SYNE1-206ENST00000367253 LAMTOR3Q9UHA4 124 aa7.18□□□□□ -1.26
SYNE1-206ENST00000367253 IGHV3-21A0A0B4J1V1 117 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 IGHMP01871 453 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 PIGYQ3MUY2 71 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 MRPL32Q9BYC8 188 aaKnown RBP7.17□□□□□ -1.26
SYNE1-206ENST00000367253 DOCK8Q8NF50 2099 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-206ENST00000367253 A0A1B0GUT8 65 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 C9JCJ5 164 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 RAMP1O60894 148 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 PLNP26678 52 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 FOXF2Q12947 444 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 MRPL14Q6P1L8 145 aaKnown RBP7.17□□□□□ -1.26
SYNE1-206ENST00000367253 TRPM6Q9BX84 2022 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 NTN1O95631 604 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 CD8AP01732 235 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 LGALS1P09382 135 aaKnown RBP7.17□□□□□ -1.26
SYNE1-206ENST00000367253 PRCDQ00LT1 54 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 RBMY1FQ15415 496 aaKnown RBP7.17□□□□□ -1.26
SYNE1-206ENST00000367253 CD200R1LQ6Q8B3 271 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 PHLDA1Q8WV24 401 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-206ENST00000367253 BPESC1Q9GZL8 116 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 SHISA9B4DS77 424 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 APELAP0DMC3 54 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 EDN2P20800 178 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 GCHFRP30047 84 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 PPIFP30405 207 aaKnown RBP7.17□□□□□ -1.26
SYNE1-206ENST00000367253 TMEM187Q14656 261 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 TMEM42Q69YG0 159 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 AMN1Q8IY45 258 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 LRTM2Q8N967 370 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 TMEM242Q9NWH2 141 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 KLHDC2Q9Y2U9 406 aa7.17□□□□□ -1.26
SYNE1-206ENST00000367253 POLR3KQ9Y2Y1 108 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-206ENST00000367253 CHD3Q12873 2000 aaKnown RBP7.17□□□□□ -1.26
SYNE1-206ENST00000367253 TRAV14DV4A0A0A6YYC5 116 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 LINC01619G3V211 115 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 CRLF1O75462 422 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 SRP19P09132 144 aaKnown RBP7.16□□□□□ -1.26
SYNE1-206ENST00000367253 CBLN3Q6UW01 205 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 CLDND2Q8NHS1 167 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 NABP1Q96AH0 204 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 FAM236DA0A1B0GTK5 79 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 G3V4G9 280 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 FAM236CP0DP71 79 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 FAM74A4Q5TZK3 123 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 GATAD1Q8WUU5 269 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 NPIPB13A6NJU9 1138 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 NPIPB4C9JG80 1138 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 RND2P52198 227 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 PLA2G2CQ5R387 149 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 Q6AWC8 147 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 IMMP1LQ96LU5 166 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 ZNF488Q96MN9 340 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 SIGLEC8Q9NYZ4 499 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 NDUFA3O95167 84 aa7.16□□□□□ -1.26
SYNE1-206ENST00000367253 ORMDL3Q8N138 153 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms