RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 Q9UFV3 132 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 RPL27AP46776 148 aaKnown RBP9.74□□□□□ -0.85
CLIP3-201ENST00000360535 TEX36Q5VZQ5 186 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 ALKBH7Q9BT30 221 aaPredicted RBP9.74□□□□□ -0.85
CLIP3-201ENST00000360535 FBXL15Q9H469 300 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 DCHS2Q6V1P9 2916 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 TMEM178BH3BS89 294 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 CTRLP40313 264 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 GOLT1AQ6ZVE7 132 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 SSX8Q7RTT4 187 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 Q9H3A6 140 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 C20orf202A1L168 122 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 CHEK1O14757 476 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 IGLV2-23P01705 113 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 COL8A1P27658 744 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 COTL1Q14019 142 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 SPATA12Q7Z6I5 190 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 PIP4P1Q86T03 277 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 KLHDC1Q8N7A1 406 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 NCOR1P1Q9H4R4 102 aa9.73□□□□□ -0.85
CLIP3-201ENST00000360535 SPTAN1Q13813 2472 aaKnown RBP9.73□□□□□ -0.85
CLIP3-201ENST00000360535 PRRG2O14669 202 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 TMEM186Q96B77 213 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 GPR82Q96P67 336 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 INSIG2Q9Y5U4 225 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 MUC21A0A0G2JKD1 596 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 MUC21A0A140T8X8 626 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 hDV102S1A0JD36 115 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 CNIH1O95406 144 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 IGLL1P15814 213 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 MUC21Q5SSG8 566 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 ATRXP46100 2492 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 LOXP28300 417 aaPredicted RBP9.72□□□□□ -0.85
CLIP3-201ENST00000360535 MEF2CQ06413 473 aaPredicted RBP9.72□□□□□ -0.85
CLIP3-201ENST00000360535 PNKDQ8N490 385 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 PRSS33Q8NF86 280 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 MBD6Q96DN6 1003 aa9.72□□□□□ -0.85
CLIP3-201ENST00000360535 RPP21Q9H633 154 aaKnown RBP9.72□□□□□ -0.85
CLIP3-201ENST00000360535 ANKHD1Q8IWZ3 2542 aaKnown RBP9.72□□□□□ -0.85
CLIP3-201ENST00000360535 LINC00614P0C842 121 aa9.71□□□□□ -0.85
CLIP3-201ENST00000360535 TSPOP30536 169 aa9.71□□□□□ -0.85
CLIP3-201ENST00000360535 HBBP68871 147 aa9.71□□□□□ -0.85
CLIP3-201ENST00000360535 Q6ZS92 163 aa9.71□□□□□ -0.85
CLIP3-201ENST00000360535 GTSF1Q8WW33 167 aa9.71□□□□□ -0.85
CLIP3-201ENST00000360535 RNF24Q9Y225 148 aa9.71□□□□□ -0.85
CLIP3-201ENST00000360535 TMSB15BA0A087X1C1 80 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 CRYABP02511 175 aaKnown RBP9.71□□□□□ -0.86
CLIP3-201ENST00000360535 S100A7P31151 101 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 ATP5IP56385 69 aaPredicted RBP9.71□□□□□ -0.86
CLIP3-201ENST00000360535 FAM57AQ8TBR7 257 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 RNASE8Q8TDE3 154 aaKnown RBP9.71□□□□□ -0.86
CLIP3-201ENST00000360535 C17orf77Q96MU5 243 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 IGLC7A0M8Q6 106 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 SNAI2O43623 268 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 IGHV1-8P0DP01 117 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 PSG1P11464 419 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 GFRALQ6UXV0 394 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 LINC00574Q9H8X3 128 aa9.71□□□□□ -0.86
CLIP3-201ENST00000360535 OR4C46A6NHA9 309 aa9.7□□□□□ -0.86
CLIP3-201ENST00000360535 A8MWL6 223 aa9.7□□□□□ -0.86
CLIP3-201ENST00000360535 THBDP07204 575 aa9.7□□□□□ -0.86
CLIP3-201ENST00000360535 KLF17Q5JT82 389 aaPredicted RBP9.7□□□□□ -0.86
CLIP3-201ENST00000360535 LOC102724200A0A096LPH7 203 aaPredicted RBP9.7□□□□□ -0.86
CLIP3-201ENST00000360535 LY6HO94772 140 aa9.7□□□□□ -0.86
CLIP3-201ENST00000360535 NDUFB8O95169 186 aa9.7□□□□□ -0.86
CLIP3-201ENST00000360535 CEACAM8P31997 349 aaPredicted RBP9.7□□□□□ -0.86
CLIP3-201ENST00000360535 CA7P43166 264 aa9.7□□□□□ -0.86
CLIP3-201ENST00000360535 ZFP30Q9Y2G7 519 aa9.7□□□□□ -0.86
CLIP3-201ENST00000360535 CBY3A6NI87 242 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 TCRAP04437 139 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 PRR30Q53SZ7 412 aaPredicted RBP9.69□□□□□ -0.86
CLIP3-201ENST00000360535 ZNF596Q8TC21 504 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 RNASE6Q93091 150 aaKnown RBP9.69□□□□□ -0.86
CLIP3-201ENST00000360535 RALYQ9UKM9 306 aaKnown RBP9.69□□□□□ -0.86
CLIP3-201ENST00000360535 HIGD1AQ9Y241 93 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 TRAV9-2A0A087WT02 112 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 LEPROTL1O95214 131 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 FSTL3O95633 263 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 FAM231DQ6ZW35 169 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 ARL6IP6Q8N6S5 226 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 SRSF12Q8WXF0 261 aaKnown RBP9.69□□□□□ -0.86
CLIP3-201ENST00000360535 ABHD17AQ96GS6 310 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 CHRDL1Q9BU40 450 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 TMEM70Q9BUB7 260 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 MRPL27Q9P0M9 148 aaKnown RBP9.69□□□□□ -0.86
CLIP3-201ENST00000360535 HILPDAQ9Y5L2 63 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 C5orf17Q8NAS9 161 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 URB1-AS1Q96HZ7 61 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 TMEM133Q9H2Q1 129 aa9.69□□□□□ -0.86
CLIP3-201ENST00000360535 HTR1DP28221 377 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 MC5RP33032 325 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 GAGE1Q13065 139 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 THAP8Q8NA92 274 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 NUP37Q8NFH4 326 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 RPEQ96AT9 228 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 SELENOKQ9Y6D0 94 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 IGHV3OR16-8A0A075B7F1 116 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 SERTM2A0A1B0GWG4 89 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 C2orf70A6NJV1 201 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 CEACAM4O75871 244 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms