RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 BUB3O43684 328 aa16.67■□□□□ 0.26
SHMT1-203ENST00000354098 PLP1P60201 277 aa16.67■□□□□ 0.26
SHMT1-203ENST00000354098 LCN12Q6JVE5 192 aa16.67■□□□□ 0.26
SHMT1-203ENST00000354098 PATE2Q6UY27 113 aa16.67■□□□□ 0.26
SHMT1-203ENST00000354098 PRR25Q96S07 402 aa16.67■□□□□ 0.26
SHMT1-203ENST00000354098 MFFQ9GZY8 342 aa16.67■□□□□ 0.26
SHMT1-203ENST00000354098 ZNF256Q9Y2P7 627 aaPredicted RBP16.67■□□□□ 0.26
SHMT1-203ENST00000354098 IFNA5P01569 189 aa16.66■□□□□ 0.26
SHMT1-203ENST00000354098 RPL29P47914 159 aaKnown RBP16.66■□□□□ 0.26
SHMT1-203ENST00000354098 FAM90A2PQ658T7 463 aa16.66■□□□□ 0.26
SHMT1-203ENST00000354098 RBPMS2Q6ZRY4 209 aaKnown RBP16.66■□□□□ 0.26
SHMT1-203ENST00000354098 NARS2Q96I59 477 aaKnown RBP16.66■□□□□ 0.26
SHMT1-203ENST00000354098 PXMP4Q9Y6I8 212 aa16.66■□□□□ 0.26
SHMT1-203ENST00000354098 HYPMO75409 117 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 OR5G3P0C626 314 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 GP9P14770 177 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 GUCA2BQ16661 112 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 C16orf54Q6UWD8 224 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 TCF24Q7RTU0 167 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 UHRF2Q96PU4 802 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 NEURL2Q9BR09 285 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 RSG1Q9BU20 258 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 SLC39A9Q9NUM3 307 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 RFNGQ9Y644 331 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 IGKV3-7A0A075B6H7 116 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 HMSDA8MTL9 139 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 BMI1P35226 326 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 B2MP61769 119 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 SCGB1C1Q8TD33 95 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 PPP1R14BQ96C90 147 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 TMEM231Q9H6L2 316 aa16.65■□□□□ 0.26
SHMT1-203ENST00000354098 LAMTOR1Q6IAA8 161 aa16.64■□□□□ 0.25
SHMT1-203ENST00000354098 GLMPQ8WWB7 406 aa16.64■□□□□ 0.25
SHMT1-203ENST00000354098 TMEM37Q8WXS4 190 aa16.64■□□□□ 0.25
SHMT1-203ENST00000354098 GRAMD2BQ96HH9 432 aa16.64■□□□□ 0.25
SHMT1-203ENST00000354098 ARV1Q9H2C2 271 aa16.64■□□□□ 0.25
SHMT1-203ENST00000354098 AURKAIP1Q9NWT8 199 aaPredicted RBP16.64■□□□□ 0.25
SHMT1-203ENST00000354098 ZMAT5Q9UDW3 170 aaKnown RBP16.64■□□□□ 0.25
SHMT1-203ENST00000354098 HIGD1AQ9Y241 93 aa16.64■□□□□ 0.25
SHMT1-203ENST00000354098 TRAV25A0A0B4J276 109 aa16.63■□□□□ 0.25
SHMT1-203ENST00000354098 TSPAN4O14817 238 aa16.63■□□□□ 0.25
SHMT1-203ENST00000354098 LEMD1Q68G75 181 aa16.63■□□□□ 0.25
SHMT1-203ENST00000354098 Q6ZRG5 221 aa16.63■□□□□ 0.25
SHMT1-203ENST00000354098 PARD6GQ9BYG4 376 aaPredicted RBP16.63■□□□□ 0.25
SHMT1-203ENST00000354098 SLC25A39Q9BZJ4 359 aaPredicted RBP16.63■□□□□ 0.25
SHMT1-203ENST00000354098 DNAH3Q8TD57 4116 aa16.63■□□□□ 0.25
SHMT1-203ENST00000354098 ZNF98A6NK75 572 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 CXCL2P19875 107 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 RPL11P62913 178 aaKnown RBP16.62■□□□□ 0.25
SHMT1-203ENST00000354098 GBGT1Q8N5D6 347 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 ZNF709Q8N972 641 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 SCRT1Q9BWW7 348 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 FBN3Q75N90 2809 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 MEGF8Q7Z7M0 2845 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 COX7A2P2O60397 106 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 ZNF266Q14584 549 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 GCSAMLQ5JQS6 135 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 PXDC1Q5TGL8 231 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 RPL7L1Q6DKI1 246 aaKnown RBP16.62■□□□□ 0.25
SHMT1-203ENST00000354098 SLC25A22Q9H936 323 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 PFDN2Q9UHV9 154 aa16.62■□□□□ 0.25
SHMT1-203ENST00000354098 H3BRN7 92 aa16.61■□□□□ 0.25
SHMT1-203ENST00000354098 C1QBP02746 253 aa16.61■□□□□ 0.25
SHMT1-203ENST00000354098 TFPI2P48307 235 aa16.61■□□□□ 0.25
SHMT1-203ENST00000354098 DEFA6Q01524 100 aa16.61■□□□□ 0.25
SHMT1-203ENST00000354098 KCNRGQ8N5I3 272 aa16.61■□□□□ 0.25
SHMT1-203ENST00000354098 HSD17B11Q8NBQ5 300 aa16.61■□□□□ 0.25
SHMT1-203ENST00000354098 SHANK2-AS3Q9BTD1 123 aa16.61■□□□□ 0.25
SHMT1-203ENST00000354098 DNAJC4Q9NNZ3 241 aa16.61■□□□□ 0.25
SHMT1-203ENST00000354098 C17orf112F2Z3M2 114 aa16.6■□□□□ 0.25
SHMT1-203ENST00000354098 ZNF345Q14585 488 aa16.6■□□□□ 0.25
SHMT1-203ENST00000354098 MORN5Q5VZ52 161 aa16.6■□□□□ 0.25
SHMT1-203ENST00000354098 C10orf113Q5VZT2 155 aa16.6■□□□□ 0.25
SHMT1-203ENST00000354098 LINC00305Q7Z4B0 112 aa16.6■□□□□ 0.25
SHMT1-203ENST00000354098 SPAG8Q99932 426 aaPredicted RBP16.6■□□□□ 0.25
SHMT1-203ENST00000354098 SORL1Q92673 2214 aa16.6■□□□□ 0.25
SHMT1-203ENST00000354098 ELOA3CA0A087WX78 387 aaPredicted RBP16.59■□□□□ 0.25
SHMT1-203ENST00000354098 CD5P06127 495 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 C1orf194Q5T5A4 169 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 SIGLEC15Q6ZMC9 328 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 OR8I2Q8N0Y5 310 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 MS4A6AQ9H2W1 248 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 CYTL1Q9NRR1 136 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 CD7P09564 240 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 WFDC3Q8IUB2 231 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 OR1L4Q8NGR5 311 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 SLC25A32Q9H2D1 315 aa16.59■□□□□ 0.25
SHMT1-203ENST00000354098 HELTA6NFD8 242 aa16.58■□□□□ 0.24
SHMT1-203ENST00000354098 STXBP6Q8NFX7 210 aa16.58■□□□□ 0.24
SHMT1-203ENST00000354098 KCNIP2Q9NS61 270 aa16.58■□□□□ 0.24
SHMT1-203ENST00000354098 A0A0D9SG52 128 aa16.57■□□□□ 0.24
SHMT1-203ENST00000354098 K7EIL1 84 aa16.57■□□□□ 0.24
SHMT1-203ENST00000354098 TAAR5O14804 337 aa16.57■□□□□ 0.24
SHMT1-203ENST00000354098 ATP6V0CP27449 155 aa16.57■□□□□ 0.24
SHMT1-203ENST00000354098 FFAR4Q5NUL3 377 aa16.57■□□□□ 0.24
SHMT1-203ENST00000354098 Q8N1Y9 231 aa16.57■□□□□ 0.24
SHMT1-203ENST00000354098 PFDN5Q99471 154 aa16.57■□□□□ 0.24
SHMT1-203ENST00000354098 SMAD5-AS1Q9Y6J3 95 aa16.57■□□□□ 0.24
SHMT1-203ENST00000354098 BORCS7-ASMTA0A0B4J1R7 106 aa16.56■□□□□ 0.24
SHMT1-203ENST00000354098 LGALSLQ3ZCW2 172 aaPredicted RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms