RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 IGLV3-21P80748 117 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 RNF125Q96EQ8 232 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 SRSF8Q9BRL6 282 aaKnown RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 DPH3P1Q9H4G8 78 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 MRPL55Q7Z7F7 128 aaKnown RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 TMEM75Q8N9X5 138 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 FNDC1Q4ZHG4 1894 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 SS18L2Q9UHA2 77 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 V9GYY9 64 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 HTN1P15515 57 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 ACP7Q6ZNF0 438 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 Q6ZWC4 215 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 TRAV13-2A0A0B4J235 113 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 CCL2P13500 99 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 MAFAQ8NHW3 353 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 JMJD8Q96S16 334 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 LINC00312Q9Y6C7 94 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 PFN1P07737 140 aaKnown RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 VEGFBP49765 207 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 LYPD6BQ8NI32 183 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 PATE1Q8WXA2 126 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 SCARF2Q96GP6 870 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 WFDC1Q9HC57 220 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 SHANK3Q9BYB0 1731 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 IGHV5-51A0A0C4DH38 117 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 RPP25LQ8N5L8 163 aaKnown RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 SYNJ2BPP57105 145 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 IGKV1D-42A0A075B6H8 117 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 CCL25O15444 150 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 TREML4Q6UXN2 200 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 CCL4L1Q8NHW4 92 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 HIGD1BQ9P298 99 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 F8WEM9 126 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 CDKN1AP38936 164 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 CD69Q07108 199 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 STPG4Q8N801 248 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 BADQ92934 168 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 NPYP01303 97 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 ALKBH6Q3KRA9 238 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 GTSCR1Q86UQ5 136 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 PSG8Q9UQ74 426 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 SMIM27A0A1W2PRY6 76 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 Q6ZS52 159 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 CXCL10P02778 98 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 LY6G5BQ8NDX9 201 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 G3V4G9 280 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 DUSP14O95147 198 aaKnown RBP10.5□□□□□ -0.73
COL6A3-203ENST00000353578 SUPT4H1P63272 117 aaKnown RBP10.5□□□□□ -0.73
COL6A3-203ENST00000353578 LCN12Q6JVE5 192 aa10.5□□□□□ -0.73
COL6A3-203ENST00000353578 SHISA8B8ZZ34 492 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 DSCAML1Q8TD84 2053 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 FOXG1P55316 489 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-203ENST00000353578 IGKV1D-16P01601 117 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 EGR1P18146 543 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 KLF5Q13887 457 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-203ENST00000353578 ANKRD39Q53RE8 183 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 IGHV3-7P01780 117 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 IL17RELQ6ZVW7 336 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 SORL1Q92673 2214 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 GFRALQ6UXV0 394 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 AMELYQ99218 206 aa10.49□□□□□ -0.73
COL6A3-203ENST00000353578 TRAV8-3A0A0A6YYJ7 113 aa10.48□□□□□ -0.73
COL6A3-203ENST00000353578 PF4V1P10720 104 aa10.48□□□□□ -0.73
COL6A3-203ENST00000353578 CISD3P0C7P0 127 aa10.48□□□□□ -0.73
COL6A3-203ENST00000353578 FOXI2Q6ZQN5 318 aa10.48□□□□□ -0.73
COL6A3-203ENST00000353578 SLC25A53Q5H9E4 307 aa10.48□□□□□ -0.73
COL6A3-203ENST00000353578 IGFBPL1Q8WX77 278 aa10.48□□□□□ -0.73
COL6A3-203ENST00000353578 FBXL7Q9UJT9 491 aa10.48□□□□□ -0.73
COL6A3-203ENST00000353578 IGLC7A0M8Q6 106 aa10.48□□□□□ -0.73
COL6A3-203ENST00000353578 CDK2AP2O75956 126 aa10.48□□□□□ -0.73
COL6A3-203ENST00000353578 MRPL23Q16540 153 aaKnown RBP10.47□□□□□ -0.73
COL6A3-203ENST00000353578 Q71RC1 249 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-203ENST00000353578 HAX1O00165 279 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 IGHV3-13P01766 116 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 REPIN1Q9BWE0 567 aaKnown RBP10.47□□□□□ -0.73
COL6A3-203ENST00000353578 PEMTQ9UBM1 199 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 C15orf53Q8NAA6 179 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 TCRAP04437 139 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 ZAR1Q86SH2 424 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 C12orf77C9JDV5 145 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 DEFB103AP81534 67 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 HGFACQ04756 655 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 PRR33A8MZF0 331 aa10.47□□□□□ -0.73
COL6A3-203ENST00000353578 TMEM243Q9BU79 118 aa10.46□□□□□ -0.73
COL6A3-203ENST00000353578 RIF1Q5UIP0 2472 aaKnown RBP10.46□□□□□ -0.73
COL6A3-203ENST00000353578 C16orf97H3BN30 126 aa10.46□□□□□ -0.73
COL6A3-203ENST00000353578 MRPL14Q6P1L8 145 aaKnown RBP10.46□□□□□ -0.73
COL6A3-203ENST00000353578 RNF5Q99942 180 aa10.46□□□□□ -0.73
COL6A3-203ENST00000353578 FAM214BQ7L5A3 538 aa10.46□□□□□ -0.73
COL6A3-203ENST00000353578 C1QCP02747 245 aa10.46□□□□□ -0.74
COL6A3-203ENST00000353578 AHRRA9YTQ3 701 aa10.46□□□□□ -0.74
COL6A3-203ENST00000353578 PRSS46E5RG02 174 aa10.46□□□□□ -0.74
COL6A3-203ENST00000353578 UCN2Q96RP3 112 aa10.46□□□□□ -0.74
COL6A3-203ENST00000353578 PRSS47A8MTI9 375 aa10.46□□□□□ -0.74
COL6A3-203ENST00000353578 F8VRH5 84 aa10.46□□□□□ -0.74
COL6A3-203ENST00000353578 MBNL3Q9NUK0 354 aaKnown RBP10.45□□□□□ -0.74
COL6A3-203ENST00000353578 ZNF114Q8NC26 417 aa10.45□□□□□ -0.74
COL6A3-203ENST00000353578 FZR1Q9UM11 496 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms