RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 C5orf30Q96GV9 206 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 SLC25A39Q9BZJ4 359 aaPredicted RBP6.71□□□□□ -1.34
HMGB1-203ENST00000341423 B4DEV8 164 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 CDS2O95674 445 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 CAMPP49913 170 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 OR10W1Q8NGF6 305 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 ATP6V0BQ99437 205 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 HDHD3Q9BSH5 251 aaPredicted RBP6.71□□□□□ -1.34
HMGB1-203ENST00000341423 USP9YO00507 2555 aaPredicted RBP6.71□□□□□ -1.34
HMGB1-203ENST00000341423 LMO4P61968 165 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 AURKAIP1Q9NWT8 199 aaPredicted RBP6.71□□□□□ -1.34
HMGB1-203ENST00000341423 HSPB11Q9Y547 144 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 MYH15Q9Y2K3 1946 aa6.71□□□□□ -1.34
HMGB1-203ENST00000341423 FRMPD3Q5JV73 1810 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 A0A087WWC5 75 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 GALP22466 123 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 SPINK13Q1W4C9 94 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 ATP6V0E2Q8NHE4 81 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 C16orf74Q96GX8 76 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 LINC00479Q96M42 142 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 NABP2Q9BQ15 211 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 MRPL16Q9NX20 251 aaKnown RBP6.7□□□□□ -1.34
HMGB1-203ENST00000341423 OR5AC2Q9NZP5 309 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 MTCL1Q9Y4B5 1905 aaKnown RBP6.7□□□□□ -1.34
HMGB1-203ENST00000341423 A0A1B0GWJ7 208 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 FAM90A26D6RGX4 464 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 TFF1P04155 84 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 SSBP2P81877 361 aaPredicted RBP6.7□□□□□ -1.34
HMGB1-203ENST00000341423 KIAA1644Q3SXP7 199 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 UMAD1C9J7I0 102 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 CCSO14618 274 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 TEX36Q5VZQ5 186 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 CD177Q8N6Q3 437 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 MRPL13Q9BYD1 178 aaKnown RBP6.7□□□□□ -1.34
HMGB1-203ENST00000341423 IFT22Q9H7X7 185 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 NUP214P35658 2090 aaPredicted RBP6.7□□□□□ -1.34
HMGB1-203ENST00000341423 MAP1LC3B2A6NCE7 125 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 ADMP35318 185 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 ASB13Q8WXK3 278 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 MAP1LC3BQ9GZQ8 125 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 RBFOX2O43251 390 aaKnown RBP eCLIP6.7□□□□□ -1.34
HMGB1-203ENST00000341423 MIFP14174 115 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 TOMM20LQ6UXN7 152 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 THAP8Q8NA92 274 aa6.7□□□□□ -1.34
HMGB1-203ENST00000341423 RCC2Q9P258 522 aaKnown RBP6.7□□□□□ -1.34
HMGB1-203ENST00000341423 ADAMTS9Q9P2N4 1935 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 A8MWL6 223 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 C16orf90A8MZG2 172 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 SULT1A1P50225 295 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 RAB5CP51148 216 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 SNRPNP63162 240 aaKnown RBP6.69□□□□□ -1.34
HMGB1-203ENST00000341423 TIAL1Q01085 375 aaKnown RBP eCLIP6.69□□□□□ -1.343e-6■■■■□ 21.9
HMGB1-203ENST00000341423 CD300EQ496F6 205 aaPredicted RBP6.69□□□□□ -1.34
HMGB1-203ENST00000341423 SPXQ9BT56 116 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 TANC1Q9C0D5 1861 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 SCN2AQ99250 2005 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 RAB19A4D1S5 217 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 CLDN34H7C241 214 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 UBE2AP49459 152 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 C12orf73Q69YU5 71 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 NOP10Q9NPE3 64 aaKnown RBP6.69□□□□□ -1.34
HMGB1-203ENST00000341423 BAHCC1Q9P281 2608 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 SHANK1Q9Y566 2161 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 TMEM250H0YL14 139 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 IGHV3-30P01768 117 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 IGHV3-33P01772 117 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 NBEAP1P0C6P0 100 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 RBMY1A1P0DJD3 496 aaKnown RBP6.69□□□□□ -1.34
HMGB1-203ENST00000341423 RBMY1CP0DJD4 496 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 IGHV3-30-3P0DP02 117 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 IGHV3-30-5P0DP03 117 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 SUPT4H1P63272 117 aaKnown RBP6.69□□□□□ -1.34
HMGB1-203ENST00000341423 LDLRAD3Q86YD5 345 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 ST6GAL2Q96JF0 529 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 DCAF16Q9NXF7 216 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 IGKV1D-17A0A075B6S4 117 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 IGHV3-73A0A0B4J1V6 119 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 IGHV7-4-1A0A0J9YVY3 117 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 FABP5P3A8MUU1 101 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 OR5AL1P0C617 328 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 FHITP49789 147 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 LYPD6Q86Y78 171 aa6.69□□□□□ -1.34
HMGB1-203ENST00000341423 ATRQ13535 2644 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 ZNF705FA8MVS1 300 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-203ENST00000341423 ZNF705DP0CH99 300 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-203ENST00000341423 ZNF705BP0CI00 300 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-203ENST00000341423 NTF3P20783 257 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 CKS2P33552 79 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 RPL32P62910 135 aaKnown RBP6.68□□□□□ -1.34
HMGB1-203ENST00000341423 C8orf49Q96NF6 230 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 ESM1Q9NQ30 184 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 IGHV4OR15-8A0A075B7B6 117 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 A0A087WW49 117 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 HMX2A2RU54 273 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 LINC00587B1AMM8 73 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 PGLYRP1O75594 196 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-203ENST00000341423 FOXI2Q6ZQN5 318 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 PLPPR1Q8TBJ4 325 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 NRG4Q8WWG1 115 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 Q96M66 194 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms