RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 LINC01559Q495D7 138 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 FAM181AQ8N9Y4 354 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 CXCL1P09341 107 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 RCHY1Q96PM5 261 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 RAMP3O60896 148 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 MYMXA0A1B0GTQ4 84 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 SLC25A47Q6Q0C1 308 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 SBF2Q86WG5 1849 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 CHKB-CPT1BH3BT56 60 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 IGHG4P01861 327 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 C1QCP02747 245 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 TRGV11A0A075B6L2 103 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 COLCA1Q6ZS62 124 aa10.72□□□□□ -0.69
USP47-202ENST00000339865 IGHV3-53P01767 116 aa10.71□□□□□ -0.69
USP47-202ENST00000339865 CD24P25063 80 aa10.71□□□□□ -0.69
USP47-202ENST00000339865 LIMS1P48059 325 aa10.71□□□□□ -0.69
USP47-202ENST00000339865 RNF125Q96EQ8 232 aa10.71□□□□□ -0.69
USP47-202ENST00000339865 TIMP3P35625 211 aa10.71□□□□□ -0.69
USP47-202ENST00000339865 CSTL1Q9H114 145 aa10.71□□□□□ -0.69
USP47-202ENST00000339865 FOXD3Q9UJU5 478 aaPredicted RBP10.71□□□□□ -0.69
USP47-202ENST00000339865 AZU1P20160 251 aa10.71□□□□□ -0.69
USP47-202ENST00000339865 IQCF6A8MYZ5 107 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 C22orf46C9J442 243 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 SYS1-DBNDD2H3BUS1 97 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 EFNB3Q15768 340 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 SIGLEC15Q6ZMC9 328 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 RPRMLQ8N4K4 120 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 TRBV5-7A0A0A0MS05 114 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 B5MCH6 92 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 TM4SF5O14894 197 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 NBL1P41271 181 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 PMVKQ15126 192 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 ACP7Q6ZNF0 438 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 DTX1Q86Y01 620 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 DKK4Q9UBT3 224 aa10.71□□□□□ -0.7
USP47-202ENST00000339865 DUSP14O95147 198 aaKnown RBP10.7□□□□□ -0.7
USP47-202ENST00000339865 TMEM256Q8N2U0 113 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 LINC01549A6NIU2 74 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 E9PQ18 207 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 EXOC3-AS1Q8N2X6 119 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 TMEM158Q8WZ71 300 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 TNRC6BQ9UPQ9 1833 aaKnown RBP10.7□□□□□ -0.7
USP47-202ENST00000339865 RICTORQ6R327 1708 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 TRGV1A0A0A0MS02 117 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 EFEMP2O95967 443 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 ZNF525Q8N782 197 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 TMEM52Q8NDY8 209 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 CUL9Q8IWT3 2517 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 FAM231BA6NCW3 169 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 GAGE7O76087 117 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 GAGE12FP0CL80 117 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 GAGE12GP0CL81 117 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 GAGE12IP0CL82 117 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 LOC101059948A0A1B0GTJ6 334 aa10.7□□□□□ -0.7
USP47-202ENST00000339865 NYNRINQ9P2P1 1898 aaKnown RBP10.7□□□□□ -0.7
USP47-202ENST00000339865 TEX38Q6PEX7 206 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 SS18Q15532 418 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 POU2AF1Q16633 256 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 C8orf82Q6P1X6 216 aaPredicted RBP10.69□□□□□ -0.7
USP47-202ENST00000339865 C1QL2Q7Z5L3 287 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 NGFRP08138 427 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 ZNF138P52744 262 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 ANKRD29Q8N6D5 301 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 WFDC6Q9BQY6 131 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 PMS2P5A8MQ11 134 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 RPL36AP83881 106 aaKnown RBP10.69□□□□□ -0.7
USP47-202ENST00000339865 RHOGP84095 191 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 STPG4Q8N801 248 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 RPL36ALQ969Q0 106 aaKnown RBP10.69□□□□□ -0.7
USP47-202ENST00000339865 RTBDNQ9BSG5 229 aaPredicted RBP10.69□□□□□ -0.7
USP47-202ENST00000339865 VCYO14598 125 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 ZC2HC1BQ5TFG8 222 aa10.69□□□□□ -0.7
USP47-202ENST00000339865 F8VVB4 439 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 F8VWA3 439 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 PIN1P1O15428 100 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 THAP8Q8NA92 274 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 BCORQ6W2J9 1755 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 TINCRA0A1B0GVN0 87 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 CRYBA4P53673 196 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 FGF6P10767 208 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 CDKN1AP38936 164 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 A0A1W2PPV9 198 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 SMKR1H3BMG3 65 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 FAM201AQ5SY85 155 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 FRMPD3Q5JV73 1810 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 UCP1P25874 307 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 ZIC4Q8N9L1 334 aa10.68□□□□□ -0.7
USP47-202ENST00000339865 ZNF664Q8N3J9 261 aa10.67□□□□□ -0.7
USP47-202ENST00000339865 NUP35Q8NFH5 326 aa10.67□□□□□ -0.7
USP47-202ENST00000339865 PPDPFLQ8WWR9 84 aa10.67□□□□□ -0.7
USP47-202ENST00000339865 PFN2P35080 140 aa10.67□□□□□ -0.7
USP47-202ENST00000339865 DUSP15Q9H1R2 295 aaPredicted RBP10.67□□□□□ -0.7
USP47-202ENST00000339865 SRRM4A7MD48 611 aaKnown RBP10.67□□□□□ -0.7
USP47-202ENST00000339865 B9A039 149 aa10.67□□□□□ -0.7
USP47-202ENST00000339865 BMPERQ8N8U9 685 aa10.67□□□□□ -0.7
USP47-202ENST00000339865 WFDC9Q8NEX5 89 aa10.67□□□□□ -0.7
USP47-202ENST00000339865 UBR3Q6ZT12 1888 aa10.67□□□□□ -0.7
USP47-202ENST00000339865 QSER1Q2KHR3 1735 aa10.67□□□□□ -0.7
USP47-202ENST00000339865 RIF1Q5UIP0 2472 aaKnown RBP10.67□□□□□ -0.7
USP47-202ENST00000339865 IGHV1-45A0A0A0MS14 117 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms