RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 BATFQ16520 125 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 C11orf42Q8N5U0 333 aa8.11□□□□□ -1.11
USP54-201ENST00000339859 RPP21Q9H633 154 aaKnown RBP8.11□□□□□ -1.11
USP54-201ENST00000339859 Q5BKY6 102 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 LYPD1Q8N2G4 141 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 PACRGQ96M98 296 aaPredicted RBP8.1□□□□□ -1.11
USP54-201ENST00000339859 C7orf77A4D0Y5 90 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 CD300CQ08708 224 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 C15orf62A8K5M9 175 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 GNG5P63218 68 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 MUC21Q5SSG8 566 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 C1orf194Q5T5A4 169 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 FER1L6-AS1Q8NA97 138 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 PRADC1Q9BSG0 188 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 PARD6GQ9BYG4 376 aaPredicted RBP8.1□□□□□ -1.11
USP54-201ENST00000339859 PMS2P5A8MQ11 134 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 FCN3O75636 299 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 NUDT3O95989 172 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 HLA-DQA1P01909 254 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 ZNF841Q6ZN19 808 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 MBD6Q96DN6 1003 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 SELENOKQ9Y6D0 94 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 TCTEX1D4Q5JR98 221 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 SHANK2-AS3Q9BTD1 123 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 NRN1Q9NPD7 142 aa8.1□□□□□ -1.11
USP54-201ENST00000339859 SOX21Q9Y651 276 aaPredicted RBP8.1□□□□□ -1.11
USP54-201ENST00000339859 RNF222A6NCQ9 220 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 DNAJC9-AS1A6NH13 148 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 C2CD4CQ8TF44 421 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 SPTBN2O15020 2390 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 FAM3BP58499 235 aaPredicted RBP8.09□□□□□ -1.11
USP54-201ENST00000339859 TMEM89A2RUT3 159 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 TNFRSF13BO14836 293 aaPredicted RBP8.09□□□□□ -1.11
USP54-201ENST00000339859 FHITP49789 147 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 DEFB131AP59861 70 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 MSMPQ1L6U9 139 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 ATP5G3P48201 142 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 LMO4P61968 165 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 PAPPA-AS1Q5QFB9 102 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 KMT2EQ8IZD2 1858 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 TRAV5A0A0B4J249 113 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 FABP4P15090 132 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 BTF3P20290 206 aaKnown RBP8.09□□□□□ -1.11
USP54-201ENST00000339859 SPATA31B1PQ5VZV4 182 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 RCHY1Q96PM5 261 aa8.09□□□□□ -1.11
USP54-201ENST00000339859 TRBV9A0A0B4J1U6 114 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 POU2AF1Q16633 256 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 TPSG1Q9NRR2 321 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 LY6G6DO95868 133 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 RPLP1P05386 114 aaKnown RBP8.08□□□□□ -1.12
USP54-201ENST00000339859 ZNF138P52744 262 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 HBBP68871 147 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 C5orf56Q8N8D9 126 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 PSG3Q16557 428 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 Q8N7P7 452 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 APC2O95996 2303 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 INAFM1C9JVW0 142 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 ZNF705AQ6ZN79 300 aaPredicted RBP8.08□□□□□ -1.12
USP54-201ENST00000339859 WFDC12Q8WWY7 111 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 EML5Q05BV3 1969 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 TRBV20OR9-2A0A075B6H5 130 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 WFDC1Q9HC57 220 aa8.08□□□□□ -1.12
USP54-201ENST00000339859 IGKV2-40A0A087WW87 121 aaPredicted RBP8.07□□□□□ -1.12
USP54-201ENST00000339859 A0A0G2JRQ6 117 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 IGKV2D-40P01614 121 aaPredicted RBP8.07□□□□□ -1.12
USP54-201ENST00000339859 MYCNOSP40205 109 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 DPH3Q96FX2 82 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 A0A087X0M5 115 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 IGHV7-4-1A0A0J9YVY3 117 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 A0A1B0GX30 115 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 PDE6HQ13956 83 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 TPRP12270 2363 aaKnown RBP8.07□□□□□ -1.12
USP54-201ENST00000339859 FBLN7Q53RD9 439 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 TCAPO15273 167 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 NMBP08949 121 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 ZGRF1Q86YA3 2104 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 H0YIZ8 118 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 FXYD7P58549 80 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 TOMM20LQ6UXN7 152 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 RFNGQ9Y644 331 aa8.07□□□□□ -1.12
USP54-201ENST00000339859 C4orf3Q8WVX3 66 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 NCKAP5O14513 1909 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 CCL20P78556 96 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 INTS1Q8N201 2190 aaKnown RBP8.06□□□□□ -1.12
USP54-201ENST00000339859 DIDO1Q9BTC0 2240 aaKnown RBP8.06□□□□□ -1.12
USP54-201ENST00000339859 GRIFINA4D1Z8 144 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 STAG3L2P0CL84 134 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 STAG3L3P0CL85 134 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 FOSL1P15407 271 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 HOXD3P31249 432 aaPredicted RBP8.06□□□□□ -1.12
USP54-201ENST00000339859 Q6YL49 198 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 A6NDX4 124 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 C8orf86Q6ZUL3 223 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 ST6GALNAC6Q969X2 333 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 TMEM191AQ9H0A3 160 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 MPDZO75970 2070 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 GCSAMLQ5JQS6 135 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 OR8A1Q8NGG7 326 aa8.06□□□□□ -1.12
USP54-201ENST00000339859 OR4C5Q8NGB2 326 aa8.05□□□□□ -1.12
USP54-201ENST00000339859 ALKBH7Q9BT30 221 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms