RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 OR51G1Q8NGK1 321 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 OR1B1Q8NGR6 318 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 TMEM167BQ9NRX6 74 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 ARL2-SNX15V9GYD0 113 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 HECTD1Q9ULT8 2610 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 TMEM250H0YL14 139 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 AP4M1O00189 453 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 CD5LO43866 347 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 Q56UQ5 140 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 TXNDC17Q9BRA2 123 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 MRPL27Q9P0M9 148 aaKnown RBP12.06□□□□□ -0.48
LIMS1-202ENST00000338045 LINC00527Q9UJ94 153 aa12.06□□□□□ -0.48
LIMS1-202ENST00000338045 TRAV5A0A0B4J249 113 aa12.05□□□□□ -0.48
LIMS1-202ENST00000338045 H3BUA1 57 aa12.05□□□□□ -0.48
LIMS1-202ENST00000338045 OR7C2O60412 319 aa12.05□□□□□ -0.48
LIMS1-202ENST00000338045 OR2C1O95371 312 aa12.05□□□□□ -0.48
LIMS1-202ENST00000338045 ZNF491Q8N8L2 437 aa12.05□□□□□ -0.48
LIMS1-202ENST00000338045 NKX6-2Q9C056 277 aaPredicted RBP12.05□□□□□ -0.48
LIMS1-202ENST00000338045 FLNAP21333 2647 aaKnown RBP12.05□□□□□ -0.48
LIMS1-202ENST00000338045 WI2-2373I1.2A0A1W2PRP0 233 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 FAM223BA6NKX1 122 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 C11orf94C9JXX5 98 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 IGHV3-23P01764 117 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 CTSGP08311 255 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 UBE2G2P60604 165 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 LYZP61626 148 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 FAM223AQ8IWN6 122 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 OR5AU1Q8NGC0 362 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 NOL4LQ96MY1 436 aaPredicted RBP12.04□□□□□ -0.48
LIMS1-202ENST00000338045 ATP6V0BQ99437 205 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 OR2T8A6NH00 312 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 FAM74A7A6NL05 159 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 HOXA3O43365 443 aaPredicted RBP12.04□□□□□ -0.48
LIMS1-202ENST00000338045 SCGB2A1O75556 95 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 G0S2P27469 103 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 ATP5G3P48201 142 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 CFHR3Q02985 330 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 REC114Q7Z4M0 266 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 OR4F5Q8NH21 305 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 RNF125Q96EQ8 232 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 CCDC140Q96MF4 163 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 MS4A10Q96PG2 267 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 OR4F4Q96R69 305 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 GAR1Q9NY12 217 aaKnown RBP12.04□□□□□ -0.48
LIMS1-202ENST00000338045 HIGD1AQ9Y241 93 aa12.04□□□□□ -0.48
LIMS1-202ENST00000338045 YTHDF2Q9Y5A9 579 aaKnown RBP12.04□□□□□ -0.48
LIMS1-202ENST00000338045 TRBV7-1A0A0A6YYK4 115 aa12.03□□□□□ -0.48
LIMS1-202ENST00000338045 PDE6DO43924 150 aa12.03□□□□□ -0.48
LIMS1-202ENST00000338045 ADMP35318 185 aa12.03□□□□□ -0.48
LIMS1-202ENST00000338045 CST9LP1Q5W188 147 aa12.03□□□□□ -0.48
LIMS1-202ENST00000338045 STXBP6Q8NFX7 210 aa12.03□□□□□ -0.48
LIMS1-202ENST00000338045 Q8WTZ3 238 aa12.03□□□□□ -0.48
LIMS1-202ENST00000338045 EEF1AKMT3Q96AZ1 226 aa12.03□□□□□ -0.48
LIMS1-202ENST00000338045 MXRA5Q9NR99 2828 aa12.03□□□□□ -0.48
LIMS1-202ENST00000338045 IGLV1-40P01703 118 aa12.02□□□□□ -0.48
LIMS1-202ENST00000338045 CEBPGP53567 150 aa12.02□□□□□ -0.48
LIMS1-202ENST00000338045 ZNF414Q96IQ9 312 aa12.02□□□□□ -0.48
LIMS1-202ENST00000338045 CHRDL1Q9BU40 450 aa12.02□□□□□ -0.48
LIMS1-202ENST00000338045 PAXXQ9BUH6 204 aa12.02□□□□□ -0.48
LIMS1-202ENST00000338045 SLC25A39Q9BZJ4 359 aaPredicted RBP12.02□□□□□ -0.48
LIMS1-202ENST00000338045 H3BQ15 152 aa12.02□□□□□ -0.49
LIMS1-202ENST00000338045 IL4P05112 153 aa12.02□□□□□ -0.49
LIMS1-202ENST00000338045 OR10J4P0C629 311 aa12.02□□□□□ -0.49
LIMS1-202ENST00000338045 NPPCP23582 126 aa12.02□□□□□ -0.49
LIMS1-202ENST00000338045 ATP5G2Q06055 141 aa12.02□□□□□ -0.49
LIMS1-202ENST00000338045 IL17RELQ6ZVW7 336 aa12.02□□□□□ -0.49
LIMS1-202ENST00000338045 FXYD5Q96DB9 178 aa12.02□□□□□ -0.49
LIMS1-202ENST00000338045 A0A1W2PRE2 83 aa12.01□□□□□ -0.49
LIMS1-202ENST00000338045 F6UZH7 168 aa12.01□□□□□ -0.49
LIMS1-202ENST00000338045 TRGV3P03979 118 aa12.01□□□□□ -0.49
LIMS1-202ENST00000338045 CLEC3BP05452 202 aa12.01□□□□□ -0.49
LIMS1-202ENST00000338045 GPR183P32249 361 aa12.01□□□□□ -0.49
LIMS1-202ENST00000338045 UBE2L3P68036 154 aaKnown RBP12.01□□□□□ -0.49
LIMS1-202ENST00000338045 KIAA0141Q14154 515 aaPredicted RBP12.01□□□□□ -0.49
LIMS1-202ENST00000338045 TMEM86BQ8N661 226 aa12.01□□□□□ -0.49
LIMS1-202ENST00000338045 SIGLECL1Q8N7X8 197 aa12.01□□□□□ -0.49
LIMS1-202ENST00000338045 TLN2Q9Y4G6 2542 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 H3BRN7 92 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 PYYP10082 97 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 USF2Q15853 346 aaPredicted RBP12□□□□□ -0.49
LIMS1-202ENST00000338045 ZNF343Q6P1L6 599 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 USMG5Q96IX5 58 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 NIPSNAP3BQ9BS92 247 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 SHANK2-AS3Q9BTD1 123 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 PUS1Q9Y606 427 aaKnown RBP eCLIP12□□□□□ -0.49
LIMS1-202ENST00000338045 GP9P14770 177 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 FAM74A3Q4VXF1 159 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 AWAT1Q58HT5 328 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 C14orf144Q96I85 54 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 PRSS22Q9GZN4 317 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 NPFFR1Q9GZQ6 430 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 PARLQ9H300 379 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 TMEM14CQ9P0S9 112 aa12□□□□□ -0.49
LIMS1-202ENST00000338045 TGOLN2O43493 480 aa11.99□□□□□ -0.49
LIMS1-202ENST00000338045 LINC00614P0C842 121 aa11.99□□□□□ -0.49
LIMS1-202ENST00000338045 SRP14P37108 136 aaKnown RBP11.99□□□□□ -0.49
LIMS1-202ENST00000338045 TPPP2P59282 170 aa11.99□□□□□ -0.49
LIMS1-202ENST00000338045 CLEC19AQ6UXS0 136 aa11.99□□□□□ -0.49
LIMS1-202ENST00000338045 C11orf52Q96A22 123 aa11.99□□□□□ -0.49
LIMS1-202ENST00000338045 ZNF702PQ9H963 129 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms