RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TMEM167BQ9NRX6 74 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 RNF24Q9Y225 148 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 ANKRD34BA5PLL1 514 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 RBFOX3A6NFN3 312 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 TCF21O43680 179 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 HSPB1P04792 205 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 CRYBA1P05813 215 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 S100A7P31151 101 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 PEA15Q15121 130 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 MORN5Q5VZ52 161 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 C10orf99Q6UWK7 81 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 TOMM20LQ6UXN7 152 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 OR4X2Q8NGF9 303 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 CITED4Q96RK1 184 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 TXNDC17Q9BRA2 123 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 SLC25A2Q9BXI2 301 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 SLC25A39Q9BZJ4 359 aaPredicted RBP11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 TMEM14CQ9P0S9 112 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 DOK5Q9P104 306 aa11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 PUS1Q9Y606 427 aaKnown RBP eCLIP11.51□□□□□ -0.57
CCDC88C-202ENST00000334448 A0A1B0GV50 99 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 KRBOX1C9JBD0 128 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 BMPR1BO00238 502 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 NDUFA4O00483 81 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 HMGB3O15347 200 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 LGALS1P09382 135 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 ARL3P36405 182 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 SRSF3P84103 164 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 TOR2AQ5JU69 321 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 KLHDC1Q8N7A1 406 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 TMEM190Q8WZ59 177 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 UHRF2Q96PU4 802 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 GNG13Q9P2W3 67 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 VAX2Q9UIW0 290 aa11.5□□□□□ -0.57
CCDC88C-202ENST00000334448 TMEM218A2RU14 115 aa11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 CYSRT1A8MQ03 144 aa11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 EIF3GO75821 320 aaKnown RBP eCLIP11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 RPLP1P05386 114 aaKnown RBP11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 GP9P14770 177 aa11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 ICAM4Q14773 271 aa11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 Q71RC1 249 aaPredicted RBP11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 OR5AU1Q8NGC0 362 aa11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 LINC01006Q8NI28 216 aa11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 TMPRSS5Q9H3S3 457 aa11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 PEF1Q9UBV8 284 aaKnown RBP11.49□□□□□ -0.57
CCDC88C-202ENST00000334448 CLPSL1A2RUU4 121 aa11.48□□□□□ -0.57
CCDC88C-202ENST00000334448 GGCTO75223 188 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-202ENST00000334448 TRBV12-3P01733 135 aa11.48□□□□□ -0.57
CCDC88C-202ENST00000334448 ZP3P21754 424 aa11.48□□□□□ -0.57
CCDC88C-202ENST00000334448 CDX1P47902 265 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-202ENST00000334448 LCNL1Q6ZST4 164 aa11.48□□□□□ -0.57
CCDC88C-202ENST00000334448 EIF5A2Q9GZV4 153 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-202ENST00000334448 RABAC1Q9UI14 185 aa11.48□□□□□ -0.57
CCDC88C-202ENST00000334448 U3KQE9 123 aa11.48□□□□□ -0.57
CCDC88C-202ENST00000334448 TRAV5A0A0B4J249 113 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 ZNF98A6NK75 572 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 C9JQL5 133 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 PPP5D1E7EU14 171 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 I3L521 148 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 MRPS12O15235 138 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 OR7C2O60412 319 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 IGHV3-11P01762 117 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 UBE2L3P68036 154 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 MEF2BQ02080 365 aaPredicted RBP11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 HAGHQ16775 308 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 TCTEX1D4Q5JR98 221 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 C10orf91Q5T1B1 145 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 C1orf194Q5T5A4 169 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 GPHB5Q86YW7 130 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 OR4F5Q8NH21 305 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 FXYD5Q96DB9 178 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 RARRES2Q99969 163 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 PAXXQ9BUH6 204 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 SLC35B3Q9H1N7 401 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 OR51M1Q9H341 326 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 GNB4Q9HAV0 340 aa11.47□□□□□ -0.57
CCDC88C-202ENST00000334448 NF1P21359 2839 aa11.46□□□□□ -0.57
CCDC88C-202ENST00000334448 A0A1W2PRE2 83 aa11.46□□□□□ -0.57
CCDC88C-202ENST00000334448 TMEM250H0YL14 139 aa11.46□□□□□ -0.57
CCDC88C-202ENST00000334448 CRYBB3P26998 211 aa11.46□□□□□ -0.57
CCDC88C-202ENST00000334448 TREM1Q9NP99 234 aa11.46□□□□□ -0.57
CCDC88C-202ENST00000334448 FAM74A7A6NL05 159 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 PAGE4O60829 102 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 SRP19P09132 144 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 IGLC2P0DOY2 106 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 PROK1P58294 105 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 CD81P60033 236 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 BPIFA4PQ86YQ2 179 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 RXFP4Q8TDU9 374 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 C4orf3Q8WVX3 66 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 GPR82Q96P67 336 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 METTL26Q96S19 204 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 TCEAL7Q9BRU2 100 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 SEC11CQ9BY50 192 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 NKX6-2Q9C056 277 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 TMEM231Q9H6L2 316 aa11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 CARHSP1Q9Y2V2 147 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-202ENST00000334448 K7EMT4 169 aa11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 BUB3O43684 328 aa11.44□□□□□ -0.58
CCDC88C-202ENST00000334448 SFTA3P0C7M3 94 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms