RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 GDF5OSQ5U4N7 250 aa14.12□□□□□ -0.15
LIME1-201ENST00000309546 OR8I2Q8N0Y5 310 aa14.12□□□□□ -0.15
LIME1-201ENST00000309546 C9orf170A2RU37 121 aa14.11□□□□□ -0.15
LIME1-201ENST00000309546 NAP1L6A6NFF2 107 aa14.11□□□□□ -0.15
LIME1-201ENST00000309546 PRSS46E5RG02 174 aa14.11□□□□□ -0.15
LIME1-201ENST00000309546 ZNF701M0R085 212 aaPredicted RBP14.11□□□□□ -0.15
LIME1-201ENST00000309546 NDUFB6O95139 128 aa14.11□□□□□ -0.15
LIME1-201ENST00000309546 PSMB3P49720 205 aa14.11□□□□□ -0.15
LIME1-201ENST00000309546 FXYD7P58549 80 aa14.11□□□□□ -0.15
LIME1-201ENST00000309546 Q6ZTC4 211 aa14.11□□□□□ -0.15
LIME1-201ENST00000309546 FLVCR2Q9UPI3 526 aa14.11□□□□□ -0.15
LIME1-201ENST00000309546 ACOT7LQ6ZUV0 252 aa14.1□□□□□ -0.15
LIME1-201ENST00000309546 SLC25A22Q9H936 323 aa14.1□□□□□ -0.15
LIME1-201ENST00000309546 CELA1Q9UNI1 258 aa14.1□□□□□ -0.15
LIME1-201ENST00000309546 STRAPQ9Y3F4 350 aaKnown RBP14.1□□□□□ -0.15
LIME1-201ENST00000309546 SMCO3A2RU48 225 aa14.09□□□□□ -0.15
LIME1-201ENST00000309546 SOCS3O14543 225 aa14.09□□□□□ -0.15
LIME1-201ENST00000309546 GATA2P23769 480 aaPredicted RBP14.09□□□□□ -0.15
LIME1-201ENST00000309546 TCTAP57738 103 aa14.09□□□□□ -0.15
LIME1-201ENST00000309546 POLR2GP62487 172 aaKnown RBP eCLIP14.09□□□□□ -0.15
LIME1-201ENST00000309546 FOXI2Q6ZQN5 318 aa14.09□□□□□ -0.15
LIME1-201ENST00000309546 ZNF767PQ75MW2 155 aa14.09□□□□□ -0.15
LIME1-201ENST00000309546 BPIFCQ8NFQ6 507 aa14.09□□□□□ -0.15
LIME1-201ENST00000309546 OR4B1Q8NGF8 309 aa14.09□□□□□ -0.15
LIME1-201ENST00000309546 SAV1Q9H4B6 383 aaPredicted RBP14.09□□□□□ -0.15
LIME1-201ENST00000309546 TRAV10A0A0B4J240 114 aa14.08□□□□□ -0.16
LIME1-201ENST00000309546 SSSCA1O60232 199 aa14.08□□□□□ -0.16
LIME1-201ENST00000309546 CFDP00746 253 aaPredicted RBP14.08□□□□□ -0.16
LIME1-201ENST00000309546 ORM2P19652 201 aa14.08□□□□□ -0.16
LIME1-201ENST00000309546 C4orf46Q504U0 113 aa14.08□□□□□ -0.16
LIME1-201ENST00000309546 OR1B1Q8NGR6 318 aa14.08□□□□□ -0.16
LIME1-201ENST00000309546 SLC25A32Q9H2D1 315 aa14.08□□□□□ -0.16
LIME1-201ENST00000309546 IGHV3OR16-12A0A075B7B8 117 aa14.07□□□□□ -0.16
LIME1-201ENST00000309546 IFNA21P01568 189 aa14.07□□□□□ -0.16
LIME1-201ENST00000309546 OR4E1P0C645 316 aa14.07□□□□□ -0.16
LIME1-201ENST00000309546 ANXA7P20073 488 aaKnown RBP14.07□□□□□ -0.16
LIME1-201ENST00000309546 GALR1P47211 349 aa14.07□□□□□ -0.16
LIME1-201ENST00000309546 C16orf92Q96LL3 132 aa14.07□□□□□ -0.16
LIME1-201ENST00000309546 TMEM147Q9BVK8 224 aa14.07□□□□□ -0.16
LIME1-201ENST00000309546 PSENENQ9NZ42 101 aa14.07□□□□□ -0.16
LIME1-201ENST00000309546 APLNQ9ULZ1 77 aa14.07□□□□□ -0.16
LIME1-201ENST00000309546 ZNF98A6NK75 572 aa14.06□□□□□ -0.16
LIME1-201ENST00000309546 CENPXA8MT69 81 aa14.06□□□□□ -0.16
LIME1-201ENST00000309546 F6UB75 175 aa14.06□□□□□ -0.16
LIME1-201ENST00000309546 ISLRO14498 428 aa14.06□□□□□ -0.16
LIME1-201ENST00000309546 SCGB1D2O95969 90 aa14.06□□□□□ -0.16
LIME1-201ENST00000309546 ID3Q02535 119 aa14.06□□□□□ -0.16
LIME1-201ENST00000309546 EBLN2Q6P2I7 272 aa14.06□□□□□ -0.16
LIME1-201ENST00000309546 TMEM182Q6ZP80 229 aaPredicted RBP14.06□□□□□ -0.16
LIME1-201ENST00000309546 SDHCQ99643 169 aaPredicted RBP14.06□□□□□ -0.16
LIME1-201ENST00000309546 DOK5Q9P104 306 aa14.06□□□□□ -0.16
LIME1-201ENST00000309546 IGHV4-4A0A075B6R2 117 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 BTCP35070 178 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 MEOX2P50222 304 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 EMP1P54849 157 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 PRR20EP86478 221 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 PRR20CP86479 221 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 PRR20DP86480 221 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 PRR20BP86481 221 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 PRR20AP86496 221 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 SAMD13Q5VXD3 122 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 ZNF705AQ6ZN79 300 aaPredicted RBP14.05□□□□□ -0.16
LIME1-201ENST00000309546 OR4D5Q8NGN0 318 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 RSG1Q9BU20 258 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 SLC35B3Q9H1N7 401 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 RPRMQ9NS64 109 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 SLC45A2Q9UMX9 530 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 FRAS1Q86XX4 4008 aa14.05□□□□□ -0.16
LIME1-201ENST00000309546 IL7P13232 177 aa14.04□□□□□ -0.16
LIME1-201ENST00000309546 C12orf74Q32Q52 190 aa14.04□□□□□ -0.16
LIME1-201ENST00000309546 FAM78BQ5VT40 261 aa14.04□□□□□ -0.16
LIME1-201ENST00000309546 TMEM144Q7Z5S9 345 aa14.04□□□□□ -0.16
LIME1-201ENST00000309546 ZNF709Q8N972 641 aa14.04□□□□□ -0.16
LIME1-201ENST00000309546 C20orf173Q96LM9 149 aa14.04□□□□□ -0.16
LIME1-201ENST00000309546 SCRT1Q9BWW7 348 aa14.04□□□□□ -0.16
LIME1-201ENST00000309546 ZNF705FA8MVS1 300 aaPredicted RBP14.03□□□□□ -0.16
LIME1-201ENST00000309546 CCNKO75909 580 aa14.03□□□□□ -0.16
LIME1-201ENST00000309546 IL5P05113 134 aa14.03□□□□□ -0.16
LIME1-201ENST00000309546 ZNF705DP0CH99 300 aaPredicted RBP14.03□□□□□ -0.16
LIME1-201ENST00000309546 ZNF705BP0CI00 300 aaPredicted RBP14.03□□□□□ -0.16
LIME1-201ENST00000309546 S100A7P31151 101 aa14.03□□□□□ -0.16
LIME1-201ENST00000309546 PAX9P55771 341 aa14.03□□□□□ -0.16
LIME1-201ENST00000309546 RRAS2P62070 204 aaPredicted RBP14.03□□□□□ -0.16
LIME1-201ENST00000309546 PSG9Q00887 426 aa14.03□□□□□ -0.16
LIME1-201ENST00000309546 FGL1Q08830 312 aa14.03□□□□□ -0.16
LIME1-201ENST00000309546 IAH1Q2TAA2 248 aaPredicted RBP14.03□□□□□ -0.16
LIME1-201ENST00000309546 SPATA31B1PQ5VZV4 182 aa14.03□□□□□ -0.16
LIME1-201ENST00000309546 CYP2G1PQ6ZSU1 146 aa14.03□□□□□ -0.16
LIME1-201ENST00000309546 DNAH6Q9C0G6 4158 aa14.03□□□□□ -0.16
LIME1-201ENST00000309546 VPS13DQ5THJ4 4388 aa14.02□□□□□ -0.16
LIME1-201ENST00000309546 DEFB131BA0A096LNP1 70 aa14.02□□□□□ -0.17
LIME1-201ENST00000309546 A0A0J9YX75 114 aa14.02□□□□□ -0.17
LIME1-201ENST00000309546 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.02□□□□□ -0.17
LIME1-201ENST00000309546 SMIM8Q96KF7 97 aa14.02□□□□□ -0.17
LIME1-201ENST00000309546 CLUHP3Q96NS8 147 aa14.02□□□□□ -0.17
LIME1-201ENST00000309546 GPR82Q96P67 336 aa14.02□□□□□ -0.17
LIME1-201ENST00000309546 NEU1Q99519 415 aa14.02□□□□□ -0.17
LIME1-201ENST00000309546 C7orf50Q9BRJ6 194 aaKnown RBP14.02□□□□□ -0.17
LIME1-201ENST00000309546 PMS2P5A8MQ11 134 aa14.01□□□□□ -0.17
LIME1-201ENST00000309546 H3BRN7 92 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms