RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 IGKV1D-17A0A075B6S4 117 aa15.79■□□□□ 0.12
USP48-201ENST00000308271 D6R8Y8 96 aa15.79■□□□□ 0.12
USP48-201ENST00000308271 PRR31Q5SQ13 230 aa15.79■□□□□ 0.12
USP48-201ENST00000308271 KIAA1671Q9BY89 1806 aa15.79■□□□□ 0.12
USP48-201ENST00000308271 NDUFA3O95167 84 aa15.79■□□□□ 0.12
USP48-201ENST00000308271 TMEM14BQ9NUH8 114 aa15.79■□□□□ 0.12
USP48-201ENST00000308271 IGLL1P15814 213 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 BCL6BQ8N143 479 aaPredicted RBP15.78■□□□□ 0.12
USP48-201ENST00000308271 SLC25A2Q9BXI2 301 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 FAM231BA6NCW3 169 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 EEF1AKMT3Q96AZ1 226 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 IGHV2-26A0A0B4J1V2 119 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 M0R381 172 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 IGHV1-46P01743 117 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 ZNF138P52744 262 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 CT83Q5H943 113 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 TMEM170BQ5T4T1 132 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 EXOC3-AS1Q8N2X6 119 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 WNK2Q9Y3S1 2297 aa15.78■□□□□ 0.12
USP48-201ENST00000308271 SMIM27A0A1W2PRY6 76 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 KIR3DS1Q14943 382 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 PAPPA-AS1Q5QFB9 102 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 SLC25A39Q9BZJ4 359 aaPredicted RBP15.77■□□□□ 0.12
USP48-201ENST00000308271 ZNF407Q9C0G0 2248 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 LOC105371242A0A075B767 164 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 APOMO95445 188 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 WNT2P09544 360 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 SMAGPQ0VAQ4 97 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 SLAQ13239 276 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 MLANAQ16655 118 aa15.77■□□□□ 0.12
USP48-201ENST00000308271 ESDP10768 282 aa15.77■□□□□ 0.11
USP48-201ENST00000308271 PRSS8Q16651 343 aa15.77■□□□□ 0.11
USP48-201ENST00000308271 TNFRSF14Q92956 283 aa15.77■□□□□ 0.11
USP48-201ENST00000308271 F2Z2F3 143 aa15.77■□□□□ 0.11
USP48-201ENST00000308271 COL6A6A6NMZ7 2263 aa15.76■□□□□ 0.11
USP48-201ENST00000308271 PMS2P5A8MQ11 134 aa15.76■□□□□ 0.11
USP48-201ENST00000308271 GGTLC3B5MD39 225 aa15.76■□□□□ 0.11
USP48-201ENST00000308271 APOBEC3AP31941 199 aaPredicted RBP15.76■□□□□ 0.11
USP48-201ENST00000308271 ARPC1AQ92747 370 aa15.76■□□□□ 0.11
USP48-201ENST00000308271 SRSF1Q07955 248 aaKnown RBP eCLIP15.76■□□□□ 0.113e-8■■■□□ 14.8
USP48-201ENST00000308271 ZNF492Q9P255 531 aa15.76■□□□□ 0.11
USP48-201ENST00000308271 VWC2Q2TAL6 325 aa15.76■□□□□ 0.11
USP48-201ENST00000308271 PLSCR4Q9NRQ2 329 aa15.76■□□□□ 0.11
USP48-201ENST00000308271 IGHV3OR16-13A0A075B7E8 117 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 IGHV3-74A0A0B4J1X5 117 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 NBR2O15453 112 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 ASIPP42127 132 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 GAGE13Q4V321 117 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 NPIPB6E9PJ23 425 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 H0YJW9 148 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 HTN1P15515 57 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 ATP5G2Q06055 141 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 LHFPL4Q7Z7J7 247 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 SLC50A1Q9BRV3 221 aa15.75■□□□□ 0.11
USP48-201ENST00000308271 IGHV3-23P01764 117 aa15.74■□□□□ 0.11
USP48-201ENST00000308271 LYZL1Q6UWQ5 148 aa15.74■□□□□ 0.11
USP48-201ENST00000308271 SPACA3Q8IXA5 215 aa15.74■□□□□ 0.11
USP48-201ENST00000308271 AKAP6Q13023 2319 aa15.74■□□□□ 0.11
USP48-201ENST00000308271 BSPH1Q075Z2 132 aa15.74■□□□□ 0.11
USP48-201ENST00000308271 RNF138Q8WVD3 245 aa15.74■□□□□ 0.11
USP48-201ENST00000308271 MCRIP2Q9BUT9 160 aaKnown RBP15.74■□□□□ 0.11
USP48-201ENST00000308271 TRAV8-1A0A0A6YYK1 113 aa15.74■□□□□ 0.11
USP48-201ENST00000308271 HOXA3O43365 443 aaPredicted RBP15.73■□□□□ 0.11
USP48-201ENST00000308271 EBLN2Q6P2I7 272 aa15.73■□□□□ 0.11
USP48-201ENST00000308271 SPTBN1Q01082 2364 aaKnown RBP15.73■□□□□ 0.11
USP48-201ENST00000308271 MUC6Q6W4X9 2439 aa15.73■□□□□ 0.11
USP48-201ENST00000308271 SMAD7O15105 426 aaKnown RBP15.73■□□□□ 0.11
USP48-201ENST00000308271 IGKV1-16P04430 117 aa15.73■□□□□ 0.11
USP48-201ENST00000308271 PAX2Q02962 417 aa15.73■□□□□ 0.11
USP48-201ENST00000308271 WDR86Q86TI4 376 aa15.73■□□□□ 0.11
USP48-201ENST00000308271 LYPD1Q8N2G4 141 aa15.73■□□□□ 0.11
USP48-201ENST00000308271 INTS1Q8N201 2190 aaKnown RBP15.73■□□□□ 0.11
USP48-201ENST00000308271 Q86TA4 180 aa15.73■□□□□ 0.11
USP48-201ENST00000308271 RCHY1Q96PM5 261 aa15.73■□□□□ 0.11
USP48-201ENST00000308271 THADAQ6YHU6 1953 aa15.72■□□□□ 0.11
USP48-201ENST00000308271 ORMDL2Q53FV1 153 aa15.72■□□□□ 0.11
USP48-201ENST00000308271 FAM159AQ6UWV7 190 aa15.72■□□□□ 0.11
USP48-201ENST00000308271 SELENOKQ9Y6D0 94 aa15.72■□□□□ 0.11
USP48-201ENST00000308271 SH2D7A6NKC9 451 aaPredicted RBP15.72■□□□□ 0.11
USP48-201ENST00000308271 NPIPB5A8MRT5 1133 aa15.72■□□□□ 0.11
USP48-201ENST00000308271 IGKV3-15P01624 115 aa15.72■□□□□ 0.11
USP48-201ENST00000308271 PF4V1P10720 104 aa15.72■□□□□ 0.11
USP48-201ENST00000308271 VKORC1Q9BQB6 163 aa15.72■□□□□ 0.11
USP48-201ENST00000308271 K7EN84 100 aa15.71■□□□□ 0.11
USP48-201ENST00000308271 CCL21O00585 134 aa15.71■□□□□ 0.11
USP48-201ENST00000308271 SP9P0CG40 484 aa15.71■□□□□ 0.11
USP48-201ENST00000308271 Q5PR19 223 aa15.71■□□□□ 0.11
USP48-201ENST00000308271 MDS2Q8NDY4 140 aa15.71■□□□□ 0.11
USP48-201ENST00000308271 SLC25A15Q9Y619 301 aa15.71■□□□□ 0.11
USP48-201ENST00000308271 NUPR1O60356 82 aa15.71■□□□□ 0.1
USP48-201ENST00000308271 BEX4Q9NWD9 120 aaPredicted RBP15.71■□□□□ 0.1
USP48-201ENST00000308271 NCR2O95944 276 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 C11orf1Q9H5F2 150 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 H3BRM9 83 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 EVI2AP22794 236 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 TMPRSS3P57727 454 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 GTSCR1Q86UQ5 136 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 IGHV3OR16-8A0A075B7F1 116 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 PRR20EP86478 221 aa15.7■□□□□ 0.1
USP48-201ENST00000308271 PRR20CP86479 221 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms