RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 MAGEA5P43359 124 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 IL17RELQ6ZVW7 336 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 Q71RC1 249 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-201ENST00000303395 CD33P20138 364 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 SUPT4H1P63272 117 aaKnown RBP4.39□□□□□ -1.71
SCN1A-201ENST00000303395 FAM90A2PQ658T7 463 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF497Q6ZNH5 498 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 DSCR8Q96T75 97 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 VWA8A3KMH1 1905 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 LY6EQ16553 131 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF784Q8NCA9 323 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-201ENST00000303395 TRAV8-1A0A0A6YYK1 113 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 IGHV3-21A0A0B4J1V1 117 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 TCRBV4S1A1TA0A5B7 111 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 K7EP34 96 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 NDUFA3O95167 84 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 ANXA2RQ3ZCQ2 193 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF501Q96CX3 271 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-201ENST00000303395 PCDH15Q96QU1 1955 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 PPIAL4EA0A075B759 164 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 A0A0U1RQS6 177 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 A0A1W2PPI3 338 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 PPIAL4DF5H284 164 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 PPIAL4FP0DN26 164 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 GLRXP35754 106 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 CD300EQ496F6 205 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-201ENST00000303395 PPIAL4AQ9Y536 164 aa4.39□□□□□ -1.71
SCN1A-201ENST00000303395 A0A1W2PP11 408 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 CT62P0C5K7 136 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 IGLC2P0DOY2 106 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 IGLC3P0DOY3 106 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 TMEM155Q4W5P6 130 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 DEFB124Q8NES8 71 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 IDI2-AS1Q9NZ38 188 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF106Q9H2Y7 1883 aaKnown RBP4.38□□□□□ -1.71
SCN1A-201ENST00000303395 PLXNA2O75051 1894 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 XIRP1Q702N8 1843 aaKnown RBP4.38□□□□□ -1.71
SCN1A-201ENST00000303395 IGHG3P01860 377 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 TRGV3P03979 118 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 ADMP35318 185 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 SMRP1Q8NCR6 262 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 SRSF12Q8WXF0 261 aaKnown RBP4.38□□□□□ -1.71
SCN1A-201ENST00000303395 VOPP1Q96AW1 172 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 TMEM141Q96I45 108 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF479Q96JC4 524 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 NHP2Q9NX24 153 aaKnown RBP4.38□□□□□ -1.71
SCN1A-201ENST00000303395 CALYQ9NYX4 217 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 F8P00451 2351 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 NCR2O95944 276 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 TGFAP01135 160 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 RNASE4P34096 147 aaKnown RBP4.38□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF114Q8NC26 417 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 NOTCH4Q99466 2003 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 A0A1W2PRX2 142 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 NPSP0C0P6 89 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 KLK2P20151 261 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 CDAP32320 146 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 INSL4Q14641 139 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 MST1LQ2TV78 715 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 C9orf118A6NHY6 69 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 FOXI3A8MTJ6 420 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-201ENST00000303395 ZNF561-AS1K7EIQ3 104 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 MRPL53Q96EL3 112 aaKnown RBP4.38□□□□□ -1.71
SCN1A-201ENST00000303395 SIGLEC12Q96PQ1 595 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 IGHV1-69DA0A0B4J2H0 117 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 A0A1W2PR80 420 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 PROB1E7EW31 1015 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 LINC01619G3V211 115 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 SYS1-DBNDD2H3BUS1 97 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 LMO1P25800 156 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 SPSB3Q6PJ21 355 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 ATRAIDQ6UW56 229 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 Q6ZT83 130 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 FAM214BQ7L5A3 538 aa4.38□□□□□ -1.71
SCN1A-201ENST00000303395 MSGN1A6NI15 193 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 THBDP07204 575 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 SSTR5P35346 364 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 TMEM75Q8N9X5 138 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 IGFBPL1Q8WX77 278 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 RNF166Q96A37 237 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-201ENST00000303395 LOC105371242A0A075B767 164 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 MESP2Q0VG99 397 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 C17orf82Q86X59 251 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-201ENST00000303395 SMIM14Q96QK8 99 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 NBEAP1P0C6P0 100 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 COX8AP10176 69 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 CD28P10747 220 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 SS18Q15532 418 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 C9orf50Q5SZB4 431 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 DEFB125Q8N687 156 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 IFI27L1Q96BM0 104 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 MBNL3Q9NUK0 354 aaKnown RBP4.37□□□□□ -1.71
SCN1A-201ENST00000303395 PLA2G3Q9NZ20 509 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 TANC1Q9C0D5 1861 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 IGHG4P01861 327 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 PSG4Q00888 419 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 PIFOQ8TCI5 191 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 OVOL1O14753 267 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 CRLF1O75462 422 aa4.37□□□□□ -1.71
SCN1A-201ENST00000303395 MST1P26927 711 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms