RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ATP5J2P56134 94 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 CCL20P78556 96 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 RAMP3O60896 148 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 GUSBP1Q15486 140 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 SRSF7Q16629 238 aaKnown RBP eCLIP8.23□□□□□ -1.09
COL6A3-201ENST00000295550 REPIN1Q9BWE0 567 aaKnown RBP8.23□□□□□ -1.09
COL6A3-201ENST00000295550 ANKHD1Q8IWZ3 2542 aaKnown RBP8.23□□□□□ -1.09
COL6A3-201ENST00000295550 VWC2LB2RUY7 222 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 PROB1E7EW31 1015 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 OSTCQ9NRP0 149 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 H0YIZ8 118 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 OSR1Q8TAX0 266 aaPredicted RBP8.23□□□□□ -1.09
COL6A3-201ENST00000295550 LEPROTO15243 131 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 LINC00158P58513 81 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 FAM57AQ8TBR7 257 aa8.23□□□□□ -1.09
COL6A3-201ENST00000295550 CD300EQ496F6 205 aaPredicted RBP8.23□□□□□ -1.09
COL6A3-201ENST00000295550 NAPSAO96009 420 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 BCL6BQ8N143 479 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-201ENST00000295550 ZNF525Q8N782 197 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 ACTL10Q5JWF8 245 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 GLMPQ8WWB7 406 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 KLF17Q5JT82 389 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-201ENST00000295550 UMODP07911 640 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 HTN3P15516 51 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 A0A0U1RRA0 63 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 RFPL3SP0C7P2 107 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 ZNRF1Q8ND25 227 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 IMMP1LQ96LU5 166 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 PTPRBP23467 1997 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 LHFPL1Q86WI0 220 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 CENPVQ7Z7K6 275 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-201ENST00000295550 TSKUQ8WUA8 353 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 IGHV3OR16-10A0A075B7F0 116 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 IGKV1D-33P01593 117 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 IGKV1-33P01594 117 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 C1orf194Q5T5A4 169 aa8.22□□□□□ -1.09
COL6A3-201ENST00000295550 SLC25A48Q6ZT89 311 aaKnown RBP8.22□□□□□ -1.09
COL6A3-201ENST00000295550 TIMP3P35625 211 aa8.21□□□□□ -1.09
COL6A3-201ENST00000295550 QRFPP83859 136 aa8.21□□□□□ -1.09
COL6A3-201ENST00000295550 F2Z2F3 143 aa8.21□□□□□ -1.09
COL6A3-201ENST00000295550 HOXD3P31249 432 aaPredicted RBP8.21□□□□□ -1.09
COL6A3-201ENST00000295550 Q6ZT83 130 aa8.21□□□□□ -1.09
COL6A3-201ENST00000295550 CDCP2Q5VXM1 449 aa8.21□□□□□ -1.09
COL6A3-201ENST00000295550 TM4SF5O14894 197 aa8.21□□□□□ -1.09
COL6A3-201ENST00000295550 CEACAM1P13688 526 aa8.21□□□□□ -1.09
COL6A3-201ENST00000295550 GTSCR1Q86UQ5 136 aa8.21□□□□□ -1.09
COL6A3-201ENST00000295550 AHRRA9YTQ3 701 aa8.21□□□□□ -1.1
COL6A3-201ENST00000295550 GATA2P23769 480 aaPredicted RBP8.21□□□□□ -1.1
COL6A3-201ENST00000295550 DMRTC2Q8IXT2 367 aaPredicted RBP8.21□□□□□ -1.1
COL6A3-201ENST00000295550 LYL1P12980 280 aa8.21□□□□□ -1.1
COL6A3-201ENST00000295550 SUPT4H1P63272 117 aaKnown RBP8.21□□□□□ -1.1
COL6A3-201ENST00000295550 COL4A4P53420 1690 aaPredicted RBP8.21□□□□□ -1.1
COL6A3-201ENST00000295550 F8WEM9 126 aa8.21□□□□□ -1.1
COL6A3-201ENST00000295550 TMEM167AQ8TBQ9 72 aa8.21□□□□□ -1.1
COL6A3-201ENST00000295550 TMEM242Q9NWH2 141 aa8.21□□□□□ -1.1
COL6A3-201ENST00000295550 hDV102S1A0JD36 115 aa8.21□□□□□ -1.1
COL6A3-201ENST00000295550 PAX4O43316 350 aa8.21□□□□□ -1.1
COL6A3-201ENST00000295550 MRPL14Q6P1L8 145 aaKnown RBP8.21□□□□□ -1.1
COL6A3-201ENST00000295550 FAM90A1Q86YD7 464 aa8.21□□□□□ -1.1
COL6A3-201ENST00000295550 COX6B1P14854 86 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 TEX38Q6PEX7 206 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 CYTL1Q9NRR1 136 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 PPP1R27Q86WC6 154 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 GGTLC1Q9BX51 225 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 SUMO4Q6EEV6 95 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 SAA2-SAA4A0A096LPE2 208 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 TRAV1-1A0A0B4J248 108 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 LINC00271P0C7V0 271 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 SAA2P0DJI9 122 aaPredicted RBP8.2□□□□□ -1.1
COL6A3-201ENST00000295550 CRYGSP22914 178 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 LOC102723996A0A087X1L8 192 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 C12orf77C9JDV5 145 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 ZNF883P0CG24 379 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 CLEC19AQ6UXS0 136 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 WFDC1Q9HC57 220 aa8.2□□□□□ -1.1
COL6A3-201ENST00000295550 FABP5P3A8MUU1 101 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 NCOR1P1Q9H4R4 102 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 CXCL1P09341 107 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 TMEM8BA6NDV4 472 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 SELLP14151 372 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 LTBRP36941 435 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 ZNF497Q6ZNH5 498 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 PLEKHB2Q96CS7 222 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 RNF125Q96EQ8 232 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 PNRC2Q9NPJ4 139 aaKnown RBP8.19□□□□□ -1.1
COL6A3-201ENST00000295550 C1orf162Q8NEQ5 155 aaPredicted RBP8.19□□□□□ -1.1
COL6A3-201ENST00000295550 DEPPQ9NTK1 212 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 D6R8Y8 96 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 ZNF837Q96EG3 531 aaPredicted RBP8.19□□□□□ -1.1
COL6A3-201ENST00000295550 TCRBV4S1A1TA0A5B7 111 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 FAM90A9PA6NNJ1 464 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 RASL11AQ6T310 242 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 FBXL15Q9H469 300 aa8.19□□□□□ -1.1
COL6A3-201ENST00000295550 NABP1Q96AH0 204 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 TRAV8-3A0A0A6YYJ7 113 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 PSG3Q16557 428 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 OCC1Q8TAD7 63 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 SLC50A1Q9BRV3 221 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 TRGV11A0A075B6L2 103 aa8.18□□□□□ -1.1
COL6A3-201ENST00000295550 C15orf61A6NNL5 157 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms