RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MBD6Q96DN6 1003 aa15.88■□□□□ 0.13
VPS53-201ENST00000291074 MS4A10Q96PG2 267 aa15.88■□□□□ 0.13
VPS53-201ENST00000291074 SLC25A39Q9BZJ4 359 aaPredicted RBP15.88■□□□□ 0.13
VPS53-201ENST00000291074 C7orf69Q9H7B7 122 aa15.88■□□□□ 0.13
VPS53-201ENST00000291074 ZFP36P26651 326 aaKnown RBP15.88■□□□□ 0.13
VPS53-201ENST00000291074 VMO1Q7Z5L0 202 aa15.88■□□□□ 0.13
VPS53-201ENST00000291074 TMEM68Q96MH6 324 aa15.88■□□□□ 0.13
VPS53-201ENST00000291074 GNB4Q9HAV0 340 aa15.88■□□□□ 0.13
VPS53-201ENST00000291074 TOX4O94842 621 aa15.87■□□□□ 0.13
VPS53-201ENST00000291074 AMY1AP04745 511 aa15.87■□□□□ 0.13
VPS53-201ENST00000291074 C2orf88Q9BSF0 95 aa15.87■□□□□ 0.13
VPS53-201ENST00000291074 IZUMO1RA6ND01 250 aa15.87■□□□□ 0.13
VPS53-201ENST00000291074 NDUFA3O95167 84 aa15.87■□□□□ 0.13
VPS53-201ENST00000291074 SCGB1D1O95968 90 aa15.87■□□□□ 0.13
VPS53-201ENST00000291074 PRB4P10163 310 aaPredicted RBP15.87■□□□□ 0.13
VPS53-201ENST00000291074 WDR73Q6P4I2 378 aa15.87■□□□□ 0.13
VPS53-201ENST00000291074 FAM231DQ6ZW35 169 aa15.87■□□□□ 0.13
VPS53-201ENST00000291074 DTX2Q86UW9 622 aa15.87■□□□□ 0.13
VPS53-201ENST00000291074 NPBQ8NG41 125 aa15.86■□□□□ 0.13
VPS53-201ENST00000291074 ZNF586Q9NXT0 402 aa15.86■□□□□ 0.13
VPS53-201ENST00000291074 EREGO14944 169 aa15.86■□□□□ 0.13
VPS53-201ENST00000291074 MT-ND6P03923 174 aa15.86■□□□□ 0.13
VPS53-201ENST00000291074 GPR6P46095 362 aaPredicted RBP15.86■□□□□ 0.13
VPS53-201ENST00000291074 C5orf17Q8NAS9 161 aa15.86■□□□□ 0.13
VPS53-201ENST00000291074 RPL19P84098 196 aaKnown RBP15.85■□□□□ 0.13
VPS53-201ENST00000291074 C5orf64Q2M2E5 130 aa15.85■□□□□ 0.13
VPS53-201ENST00000291074 LINC00322Q6ZN03 302 aaPredicted RBP15.85■□□□□ 0.13
VPS53-201ENST00000291074 Q71RC1 249 aaPredicted RBP15.85■□□□□ 0.13
VPS53-201ENST00000291074 SRSF8Q9BRL6 282 aaKnown RBP15.85■□□□□ 0.13
VPS53-201ENST00000291074 KLF12Q9Y4X4 402 aa15.85■□□□□ 0.13
VPS53-201ENST00000291074 A6NNC1 897 aa15.85■□□□□ 0.13
VPS53-201ENST00000291074 BMPR1BO00238 502 aa15.85■□□□□ 0.13
VPS53-201ENST00000291074 NDPQ00604 133 aa15.85■□□□□ 0.13
VPS53-201ENST00000291074 Q6ZWC4 215 aa15.85■□□□□ 0.13
VPS53-201ENST00000291074 EXOC3-AS1Q8N2X6 119 aa15.85■□□□□ 0.13
VPS53-201ENST00000291074 NUP35Q8NFH5 326 aa15.85■□□□□ 0.13
VPS53-201ENST00000291074 UBTD1Q9HAC8 227 aa15.85■□□□□ 0.13
VPS53-201ENST00000291074 TRAV8-1A0A0A6YYK1 113 aa15.84■□□□□ 0.13
VPS53-201ENST00000291074 TCRAP04437 139 aa15.84■□□□□ 0.13
VPS53-201ENST00000291074 IQCJQ1A5X6 159 aa15.84■□□□□ 0.13
VPS53-201ENST00000291074 GRAMD2BQ96HH9 432 aa15.84■□□□□ 0.13
VPS53-201ENST00000291074 Q0VG73 95 aa15.84■□□□□ 0.13
VPS53-201ENST00000291074 PRR31Q5SQ13 230 aa15.84■□□□□ 0.13
VPS53-201ENST00000291074 GPR82Q96P67 336 aa15.84■□□□□ 0.13
VPS53-201ENST00000291074 MRPL27Q9P0M9 148 aaKnown RBP15.84■□□□□ 0.13
VPS53-201ENST00000291074 NCBP2LA6PVI3 153 aaKnown RBP15.83■□□□□ 0.13
VPS53-201ENST00000291074 HOXB4P17483 251 aaPredicted RBP15.83■□□□□ 0.13
VPS53-201ENST00000291074 SRIP30626 198 aa15.83■□□□□ 0.13
VPS53-201ENST00000291074 TPPP2P59282 170 aa15.83■□□□□ 0.13
VPS53-201ENST00000291074 SLAQ13239 276 aa15.83■□□□□ 0.13
VPS53-201ENST00000291074 RCHY1Q96PM5 261 aa15.83■□□□□ 0.13
VPS53-201ENST00000291074 A8MWP6 167 aa15.83■□□□□ 0.12
VPS53-201ENST00000291074 ESDP10768 282 aa15.83■□□□□ 0.12
VPS53-201ENST00000291074 UQCRFS1P47985 274 aa15.83■□□□□ 0.12
VPS53-201ENST00000291074 GDF5OSQ5U4N7 250 aa15.83■□□□□ 0.12
VPS53-201ENST00000291074 KIR3DL3Q8N743 410 aa15.83■□□□□ 0.12
VPS53-201ENST00000291074 C17orf77Q96MU5 243 aa15.83■□□□□ 0.12
VPS53-201ENST00000291074 MLST8Q9BVC4 326 aa15.83■□□□□ 0.12
VPS53-201ENST00000291074 ZNF331Q9NQX6 463 aaPredicted RBP15.83■□□□□ 0.12
VPS53-201ENST00000291074 HLA-DQA1P01909 254 aa15.82■□□□□ 0.12
VPS53-201ENST00000291074 PAX1P15863 534 aa15.82■□□□□ 0.12
VPS53-201ENST00000291074 BCL6BQ8N143 479 aaPredicted RBP15.82■□□□□ 0.12
VPS53-201ENST00000291074 HSPB9Q9BQS6 159 aa15.82■□□□□ 0.12
VPS53-201ENST00000291074 NAGKQ9UJ70 344 aa15.82■□□□□ 0.12
VPS53-201ENST00000291074 VWC2LB2RUY7 222 aa15.82■□□□□ 0.12
VPS53-201ENST00000291074 HIGD1CA8MV81 97 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 TOMM40O96008 361 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 HIST1H1EP10412 219 aaKnown RBP15.81■□□□□ 0.12
VPS53-201ENST00000291074 SAMD10Q9BYL1 202 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 CACNA1BQ00975 2339 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 LTAP01374 205 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 APCSP02743 223 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 IL4P05112 153 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 NUTF2P61970 127 aaKnown RBP15.81■□□□□ 0.12
VPS53-201ENST00000291074 ARPC1AQ92747 370 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 FMC1Q96HJ9 113 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 FANCD2OSQ96PS1 177 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 COX19Q49B96 90 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 TCF24Q7RTU0 167 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 ZNF491Q8N8L2 437 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 TSKUQ8WUA8 353 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 OTORQ9NRC9 128 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 TMEM14CQ9P0S9 112 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 POLR3KQ9Y2Y1 108 aaPredicted RBP15.81■□□□□ 0.12
VPS53-201ENST00000291074 RNF114Q9Y508 228 aa15.81■□□□□ 0.12
VPS53-201ENST00000291074 PAFAH1B2P68402 229 aa15.8■□□□□ 0.12
VPS53-201ENST00000291074 RNF125Q96EQ8 232 aa15.8■□□□□ 0.12
VPS53-201ENST00000291074 ASCL2Q99929 193 aa15.8■□□□□ 0.12
VPS53-201ENST00000291074 SHANK2-AS3Q9BTD1 123 aa15.8■□□□□ 0.12
VPS53-201ENST00000291074 ZNF253O75346 499 aa15.8■□□□□ 0.12
VPS53-201ENST00000291074 IGHV3-23P01764 117 aa15.8■□□□□ 0.12
VPS53-201ENST00000291074 GOLT1AQ6ZVE7 132 aa15.8■□□□□ 0.12
VPS53-201ENST00000291074 SSBP4Q9BWG4 385 aaPredicted RBP15.8■□□□□ 0.12
VPS53-201ENST00000291074 SPTAN1Q13813 2472 aaKnown RBP15.8■□□□□ 0.12
VPS53-201ENST00000291074 ZNF705FA8MVS1 300 aaPredicted RBP15.79■□□□□ 0.12
VPS53-201ENST00000291074 H3BRN7 92 aa15.79■□□□□ 0.12
VPS53-201ENST00000291074 C19orf84I3L1E1 186 aa15.79■□□□□ 0.12
VPS53-201ENST00000291074 ZNF705DP0CH99 300 aaPredicted RBP15.79■□□□□ 0.12
VPS53-201ENST00000291074 ZNF705BP0CI00 300 aaPredicted RBP15.79■□□□□ 0.12
VPS53-201ENST00000291074 CAMPP49913 170 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms