RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 AP5S1Q9NUS5 200 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 CNOT1A5YKK6 2376 aaKnown RBP11.58□□□□□ -0.56
SDC1-201ENST00000254351 CFHR2P36980 270 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 IFI27P40305 119 aaPredicted RBP11.58□□□□□ -0.56
SDC1-201ENST00000254351 PCP2Q8IVA1 136 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 WFDC12Q8WWY7 111 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 SRSF12Q8WXF0 261 aaKnown RBP11.58□□□□□ -0.56
SDC1-201ENST00000254351 C18orf15Q96N68 181 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 GPR82Q96P67 336 aa11.58□□□□□ -0.56
SDC1-201ENST00000254351 PAX2Q02962 417 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 GOLT1AQ6ZVE7 132 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 FA2HQ7L5A8 372 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 ITLN1Q8WWA0 313 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 FAM90A9PA6NNJ1 464 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 K7ERJ3 54 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 NBEAP1P0C6P0 100 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 DLX1P56177 255 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 CACNG7P62955 275 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 ERHP84090 104 aaKnown RBP11.57□□□□□ -0.56
SDC1-201ENST00000254351 GTF2H5Q6ZYL4 71 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 OR2K2Q8NGT1 345 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 PRR7Q8TB68 274 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 SPCS1Q9Y6A9 102 aa11.57□□□□□ -0.56
SDC1-201ENST00000254351 CRXO43186 299 aaPredicted RBP11.56□□□□□ -0.56
SDC1-201ENST00000254351 WT1-ASQ06250 92 aa11.56□□□□□ -0.56
SDC1-201ENST00000254351 ZCCHC24Q8N2G6 241 aaKnown RBP11.56□□□□□ -0.56
SDC1-201ENST00000254351 MRPL20Q9BYC9 149 aaKnown RBP11.56□□□□□ -0.56
SDC1-201ENST00000254351 HSPB8Q9UJY1 196 aa11.56□□□□□ -0.56
SDC1-201ENST00000254351 ENSAO43768 121 aaKnown RBP11.56□□□□□ -0.56
SDC1-201ENST00000254351 COX8AP10176 69 aa11.56□□□□□ -0.56
SDC1-201ENST00000254351 TMEM186Q96B77 213 aa11.56□□□□□ -0.56
SDC1-201ENST00000254351 C1RLQ9NZP8 487 aa11.56□□□□□ -0.56
SDC1-201ENST00000254351 EP300Q09472 2414 aaPredicted RBP11.56□□□□□ -0.56
SDC1-201ENST00000254351 TIMM23BQ5SRD1 257 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 RASL11AQ6T310 242 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 RBPMS2Q6ZRY4 209 aaKnown RBP11.55□□□□□ -0.56
SDC1-201ENST00000254351 FAM231DQ6ZW35 169 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 PPP1R35Q8TAP8 253 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 NEU4Q8WWR8 484 aaPredicted RBP11.55□□□□□ -0.56
SDC1-201ENST00000254351 CHCHD1Q96BP2 118 aaKnown RBP11.55□□□□□ -0.56
SDC1-201ENST00000254351 TPSG1Q9NRR2 321 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 RELNP78509 3460 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 FNDC10F2Z333 226 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 GCSHP23434 173 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 SMKR1H3BMG3 65 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 NTN3O00634 580 aaPredicted RBP11.55□□□□□ -0.56
SDC1-201ENST00000254351 C7orf69Q9H7B7 122 aa11.55□□□□□ -0.56
SDC1-201ENST00000254351 CACNA1HO95180 2353 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 PSMB11A5LHX3 300 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 G3V4G9 280 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 CCL3L1P16619 93 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 KIR2DS2P43631 304 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 PET117Q6UWS5 81 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 CLUHP3Q96NS8 147 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 COL25A1Q9BXS0 654 aaPredicted RBP11.54□□□□□ -0.56
SDC1-201ENST00000254351 Q9H3A6 140 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 SSUH2Q9Y2M2 353 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 SPTBN2O15020 2390 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 KBTBD11-OT1A0A1B0GTJ5 212 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 KLRC4-KLRK1H3BQV0 150 aa11.54□□□□□ -0.56
SDC1-201ENST00000254351 DLL1O00548 723 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 CDX4O14627 284 aaPredicted RBP11.53□□□□□ -0.56
SDC1-201ENST00000254351 C2orf83Q53S99 150 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 SAMD13Q5VXD3 122 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 ZNF747Q9BV97 191 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 SRRM5B3KS81 715 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 M0R1B8 84 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 SLC25A17O43808 307 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 LYZP61626 148 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 INO80CQ6PI98 192 aaPredicted RBP11.53□□□□□ -0.56
SDC1-201ENST00000254351 ADTRPQ96IZ2 230 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 RITA1Q96K30 269 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 MRPL32Q9BYC8 188 aaKnown RBP11.53□□□□□ -0.56
SDC1-201ENST00000254351 S4R3C0 116 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 MED13LQ71F56 2210 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 TEX48A0A1B0GUV7 120 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 C9orf118A6NHY6 69 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 F2RL2O00254 374 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 TCF15Q12870 199 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 ATP5L2Q7Z4Y8 100 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 C17orf77Q96MU5 243 aa11.53□□□□□ -0.56
SDC1-201ENST00000254351 PPIAL4CA0A0B4J2A2 164 aa11.52□□□□□ -0.56
SDC1-201ENST00000254351 PPIAL4GP0DN37 164 aa11.52□□□□□ -0.56
SDC1-201ENST00000254351 PIEZO2Q9H5I5 2752 aa11.52□□□□□ -0.57
SDC1-201ENST00000254351 IGKV1D-37A0A075B6S9 117 aa11.52□□□□□ -0.57
SDC1-201ENST00000254351 A6NDN8 102 aa11.52□□□□□ -0.57
SDC1-201ENST00000254351 C9orf172C9J069 976 aa11.52□□□□□ -0.57
SDC1-201ENST00000254351 C22orf46C9J442 243 aa11.52□□□□□ -0.57
SDC1-201ENST00000254351 LCNL1Q6ZST4 164 aa11.52□□□□□ -0.57
SDC1-201ENST00000254351 OR1L4Q8NGR5 311 aa11.52□□□□□ -0.57
SDC1-201ENST00000254351 JKAMPQ9P055 326 aa11.52□□□□□ -0.57
SDC1-201ENST00000254351 TCRBV4S1A1TA0A5B7 111 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 A1L4Q6 167 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 TCRAP04437 139 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 CD59P13987 128 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 LINC01545Q5VT33 79 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 PRSS33Q8NF86 280 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 TMEM213A2RRL7 107 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 D6R8Y8 96 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 K7EP34 96 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms