RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 AGMATQ9BSE5 352 aa10.52□□□□□ -0.72
USP40-201ENST00000251722 Q9H3A6 140 aa10.52□□□□□ -0.72
USP40-201ENST00000251722 TRAV1-1A0A0B4J248 108 aa10.52□□□□□ -0.73
USP40-201ENST00000251722 ETV2O00321 342 aaPredicted RBP10.52□□□□□ -0.73
USP40-201ENST00000251722 Q6ZS49 121 aa10.52□□□□□ -0.73
USP40-201ENST00000251722 NINQ8N4C6 2090 aa10.52□□□□□ -0.73
USP40-201ENST00000251722 C22orf46C9J442 243 aa10.52□□□□□ -0.73
USP40-201ENST00000251722 TMEM42Q69YG0 159 aa10.52□□□□□ -0.73
USP40-201ENST00000251722 TMEM256Q8N2U0 113 aa10.52□□□□□ -0.73
USP40-201ENST00000251722 ZNF525Q8N782 197 aa10.52□□□□□ -0.73
USP40-201ENST00000251722 A0A087X0K7 114 aa10.52□□□□□ -0.73
USP40-201ENST00000251722 APOHP02749 345 aaPredicted RBP10.52□□□□□ -0.73
USP40-201ENST00000251722 Q8TCH9 128 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 SMPXQ9UHP9 88 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 V9GYY9 64 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 MYOFQ9NZM1 2061 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 THADAQ6YHU6 1953 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 IGKV1-9A0A0C4DH69 117 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 IGHV1-3A0A0C4DH29 117 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 EFNA2O43921 213 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 Q0VG73 95 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 TMEM200BQ69YZ2 307 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 CYTL1Q9NRR1 136 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 NYNRINQ9P2P1 1898 aaKnown RBP10.51□□□□□ -0.73
USP40-201ENST00000251722 MCRIP2Q9BUT9 160 aaKnown RBP10.51□□□□□ -0.73
USP40-201ENST00000251722 TMEM160Q9NX00 188 aa10.51□□□□□ -0.73
USP40-201ENST00000251722 SUMO2P61956 95 aaKnown RBP10.51□□□□□ -0.73
USP40-201ENST00000251722 TRBV7-9A0A0J9YWB2 115 aa10.5□□□□□ -0.73
USP40-201ENST00000251722 F2Z2F3 143 aa10.5□□□□□ -0.73
USP40-201ENST00000251722 CT83Q5H943 113 aa10.5□□□□□ -0.73
USP40-201ENST00000251722 C9orf139Q6ZV77 190 aa10.5□□□□□ -0.73
USP40-201ENST00000251722 NAA38Q9BRA0 125 aaKnown RBP10.5□□□□□ -0.73
USP40-201ENST00000251722 FNDC1Q4ZHG4 1894 aaPredicted RBP10.5□□□□□ -0.73
USP40-201ENST00000251722 A0A1W2PRX2 142 aa10.5□□□□□ -0.73
USP40-201ENST00000251722 SIGLEC15Q6ZMC9 328 aa10.5□□□□□ -0.73
USP40-201ENST00000251722 OSTCQ9NRP0 149 aa10.5□□□□□ -0.73
USP40-201ENST00000251722 PGPEP1Q9NXJ5 209 aa10.5□□□□□ -0.73
USP40-201ENST00000251722 DOCK4Q8N1I0 1966 aa10.5□□□□□ -0.73
USP40-201ENST00000251722 C9JCJ5 164 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 FNDC10F2Z333 226 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 EVI2AP22794 236 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 EFNB3Q15768 340 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 A0A1W2PPM0 123 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 G3V4G9 280 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 IGHV3-11P01762 117 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 IGHV3-23P01764 117 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 RNASE4P34096 147 aaKnown RBP10.49□□□□□ -0.73
USP40-201ENST00000251722 S100A7L2Q5SY68 101 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 RP1L1Q8IWN7 2480 aaPredicted RBP10.49□□□□□ -0.73
USP40-201ENST00000251722 ATXN8Q156A1 80 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 TRGV9Q99603 122 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 GAFA1Q96PS6 74 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 GATA4P43694 442 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 RBX1P62877 108 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 C5orf64Q2M2E5 130 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 CRIM1Q9NZV1 1036 aa10.49□□□□□ -0.73
USP40-201ENST00000251722 MAP1BP46821 2468 aaKnown RBP10.48□□□□□ -0.73
USP40-201ENST00000251722 MSMBP08118 114 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 SEC16AO15027 2179 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 TMEM258P61165 79 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 PRADC1Q9BSG0 188 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 TANC1Q9C0D5 1861 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 ID3Q02535 119 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 ETDBQ3ZM63 59 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 BUB1B-PAK6H3BSN5 160 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 CGAP01215 116 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 IGKV3-20P01619 116 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 ZNF688P0C7X2 276 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 UBE2E1P51965 193 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 FOXA3P55318 350 aaPredicted RBP10.48□□□□□ -0.73
USP40-201ENST00000251722 CCL20P78556 96 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 ATP5L2Q7Z4Y8 100 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 GPHA2Q96T91 129 aa10.48□□□□□ -0.73
USP40-201ENST00000251722 NXT2Q9NPJ8 142 aaKnown RBP10.48□□□□□ -0.73
USP40-201ENST00000251722 GREB1Q4ZG55 1949 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 IGLC7A0M8Q6 106 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 CD33P20138 364 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 DPM2O94777 84 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 TRIOBPQ9H2D6 2365 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 TFF3Q07654 80 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 GUSBP1Q15486 140 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 NSUN5P1Q3KNT7 163 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 ZNF474Q6S9Z5 364 aaPredicted RBP10.47□□□□□ -0.73
USP40-201ENST00000251722 ORMDL3Q8N138 153 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 LYPD1Q8N2G4 141 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 KIR3DL3Q8N743 410 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 FGFBP3Q8TAT2 258 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 WDR83OSQ9Y284 106 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 SHISA3A0PJX4 238 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 M0R381 172 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 SAP30O75446 220 aa10.47□□□□□ -0.73
USP40-201ENST00000251722 CRPP02741 224 aa10.46□□□□□ -0.73
USP40-201ENST00000251722 PIKFYVEQ9Y2I7 2098 aa10.46□□□□□ -0.73
USP40-201ENST00000251722 RLFQ13129 1914 aa10.46□□□□□ -0.73
USP40-201ENST00000251722 IGHV3-35A0A0C4DH35 117 aa10.46□□□□□ -0.73
USP40-201ENST00000251722 SYS1-DBNDD2H3BUS1 97 aa10.46□□□□□ -0.73
USP40-201ENST00000251722 DEFB125Q8N687 156 aa10.46□□□□□ -0.73
USP40-201ENST00000251722 LYNX1G3V0Z9 82 aa10.46□□□□□ -0.74
USP40-201ENST00000251722 TOMM40O96008 361 aa10.46□□□□□ -0.74
USP40-201ENST00000251722 HBDP02042 147 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms