RNA–Protein interactions for RNA: ENST00000238379.9

HDHD3-201, Transcript of haloacid dehalogenase like hydrolase domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDHD3, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3-201ENST00000238379 NPPCP23582 126 aa11.81□□□□□ -0.52
HDHD3-201ENST00000238379 UBE2L3P68036 154 aaKnown RBP11.81□□□□□ -0.52
HDHD3-201ENST00000238379 USF2Q15853 346 aaPredicted RBP11.81□□□□□ -0.52
HDHD3-201ENST00000238379 TMEM95Q3KNT9 176 aa11.81□□□□□ -0.52
HDHD3-201ENST00000238379 CLEC19AQ6UXS0 136 aa11.81□□□□□ -0.52
HDHD3-201ENST00000238379 STXBP6Q8NFX7 210 aa11.81□□□□□ -0.52
HDHD3-201ENST00000238379 PUS1Q9Y606 427 aaKnown RBP eCLIP11.81□□□□□ -0.52
HDHD3-201ENST00000238379 TPPP2P59282 170 aa11.81□□□□□ -0.52
HDHD3-201ENST00000238379 LEMD1Q68G75 181 aa11.81□□□□□ -0.52
HDHD3-201ENST00000238379 FXYD5Q96DB9 178 aa11.81□□□□□ -0.52
HDHD3-201ENST00000238379 ATP6V0BQ99437 205 aa11.81□□□□□ -0.52
HDHD3-201ENST00000238379 KLK15Q9H2R5 256 aa11.81□□□□□ -0.52
HDHD3-201ENST00000238379 BTN1A1Q13410 526 aa11.8□□□□□ -0.52
HDHD3-201ENST00000238379 SHANK2-AS3Q9BTD1 123 aa11.8□□□□□ -0.52
HDHD3-201ENST00000238379 PRSS22Q9GZN4 317 aa11.8□□□□□ -0.52
HDHD3-201ENST00000238379 NPFFR1Q9GZQ6 430 aa11.8□□□□□ -0.52
HDHD3-201ENST00000238379 F6UZH7 168 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 H3BRN7 92 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 PF4V1P10720 104 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 GP9P14770 177 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 AWAT1Q58HT5 328 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 ZNF343Q6P1L6 599 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 ZNF600Q6ZNG1 722 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 RPUSD4Q96CM3 377 aaKnown RBP11.79□□□□□ -0.52
HDHD3-201ENST00000238379 USMG5Q96IX5 58 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 DUX5Q96PT3 197 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 NIPSNAP3BQ9BS92 247 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 PARLQ9H300 379 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 ZNF702PQ9H963 129 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 AKAP9Q99996 3911 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 A0A1W2PRE2 83 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 ZNF727A8MUV8 499 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 TGOLN2O43493 480 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 TMEM86BQ8N661 226 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 C20orf24Q9BUV8 137 aa11.79□□□□□ -0.52
HDHD3-201ENST00000238379 OTOGQ6ZRI0 2925 aa11.78□□□□□ -0.52
HDHD3-201ENST00000238379 GGTLC3B5MD39 225 aa11.78□□□□□ -0.52
HDHD3-201ENST00000238379 M0R036 132 aa11.78□□□□□ -0.52
HDHD3-201ENST00000238379 IGHG4P01861 327 aa11.78□□□□□ -0.52
HDHD3-201ENST00000238379 TVP23CQ96ET8 276 aa11.78□□□□□ -0.52
HDHD3-201ENST00000238379 SMIM7Q9BQ49 75 aa11.78□□□□□ -0.52
HDHD3-201ENST00000238379 TMEM14CQ9P0S9 112 aa11.78□□□□□ -0.52
HDHD3-201ENST00000238379 IGHV3-35A0A0C4DH35 117 aa11.77□□□□□ -0.52
HDHD3-201ENST00000238379 SCO2A0A1W2PP80 73 aa11.77□□□□□ -0.52
HDHD3-201ENST00000238379 DNASE2O00115 360 aaPredicted RBP11.77□□□□□ -0.52
HDHD3-201ENST00000238379 NDUFB4O95168 129 aa11.77□□□□□ -0.52
HDHD3-201ENST00000238379 RAB9AP51151 201 aa11.77□□□□□ -0.52
HDHD3-201ENST00000238379 ZNF674Q2M3X9 581 aa11.77□□□□□ -0.52
HDHD3-201ENST00000238379 FAM74A3Q4VXF1 159 aa11.77□□□□□ -0.52
HDHD3-201ENST00000238379 TOMM20LQ6UXN7 152 aa11.77□□□□□ -0.52
HDHD3-201ENST00000238379 ZNF329Q86UD4 541 aa11.77□□□□□ -0.52
HDHD3-201ENST00000238379 ZFAND3Q9H8U3 227 aa11.77□□□□□ -0.52
HDHD3-201ENST00000238379 C7orf77A4D0Y5 90 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 SNRPCP09234 159 aaKnown RBP11.76□□□□□ -0.53
HDHD3-201ENST00000238379 NBEAP1P0C6P0 100 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 HNF1AP20823 631 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 PSMB8P28062 276 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 SUMO1P63165 101 aaKnown RBP11.76□□□□□ -0.53
HDHD3-201ENST00000238379 LCNL1Q6ZST4 164 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 S100A7AQ86SG5 101 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 Q8N2B8 174 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 C11orf52Q96A22 123 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 DERL1Q9BUN8 251 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 SDF2L1Q9HCN8 221 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 ZNF98A6NK75 572 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 RHEBQ15382 184 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 SMR3AQ99954 134 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 GNB4Q9HAV0 340 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 TMEM160Q9NX00 188 aa11.76□□□□□ -0.53
HDHD3-201ENST00000238379 A0A0G2JLM5 398 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 TMEM89A2RUT3 159 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 PPP5D1E7EU14 171 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 BMPR1BO00238 502 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 MRPS12O15235 138 aaKnown RBP11.75□□□□□ -0.53
HDHD3-201ENST00000238379 AKR1C3P42330 323 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 PNRC1Q12796 327 aaPredicted RBP11.75□□□□□ -0.53
HDHD3-201ENST00000238379 TMEM241Q24JQ0 296 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 TMEM88Q6PEY1 159 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 C10orf99Q6UWK7 81 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 RPS10P5Q9NQ39 176 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 NAT8Q9UHE5 227 aa11.75□□□□□ -0.53
HDHD3-201ENST00000238379 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.74□□□□□ -0.53
HDHD3-201ENST00000238379 DNAJC9-AS1A6NH13 148 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 TRBV12-3P01733 135 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 IGHV3-11P01762 117 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 HIST1H1EP10412 219 aaKnown RBP11.74□□□□□ -0.53
HDHD3-201ENST00000238379 MYCNOSP40205 109 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 RELQ04864 619 aaPredicted RBP11.74□□□□□ -0.53
HDHD3-201ENST00000238379 BPIFA4PQ86YQ2 179 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 BLNKQ8WV28 456 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 ELOVL1Q9BW60 279 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 ZNF586Q9NXT0 402 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 RABAC1Q9UI14 185 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 MTORP42345 2549 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 IGHV3OR16-8A0A075B7F1 116 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 ARL3P36405 182 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 RANP62826 216 aaKnown RBP11.74□□□□□ -0.53
HDHD3-201ENST00000238379 CBLN2Q8IUK8 224 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 OR4X2Q8NGF9 303 aa11.74□□□□□ -0.53
HDHD3-201ENST00000238379 TRBV20OR9-2A0A075B6H5 130 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms