RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 Q86TA4 180 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 TMEM74BQ9NUR3 256 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 OR13A1Q8NGR1 328 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 C20orf78Q9BR46 151 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 VSIRQ9H7M9 311 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 D6R8Y8 96 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 C1QL2Q7Z5L3 287 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 RASL10AQ92737 203 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 PRKNO60260 465 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-220ENST00000641603 PPP1R32Q7Z5V6 425 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 LOC285556D6RIA3 1793 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 TRBV7-9A0A0J9YWB2 115 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 PRR32B1ATL7 298 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 SOCS3O14543 225 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 FOXI1Q12951 378 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 FAM219BQ5XKK7 198 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 Q6Q795 121 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 VCYO14598 125 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 IGKV1-5P01602 117 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 FAM106CPP0CH98 169 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 FAM106AQ4KMX7 169 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 NPPCP23582 126 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 LRRC75A-AS1Q8N1F1 130 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 RNF125Q96EQ8 232 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 A0A0J9YW62 118 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 CRPP02741 224 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 SNRPD3P62318 126 aaKnown RBP3.86□□□□□ -1.79
SCN1A-220ENST00000641603 DTX1Q86Y01 620 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 TDRD6O60522 2096 aaKnown RBP3.86□□□□□ -1.79
SCN1A-220ENST00000641603 H0Y8X5 98 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 VEGFBP49765 207 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 ATP5EP2Q5VTU8 51 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 TMEM219Q86XT9 240 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 SPACA3Q8IXA5 215 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 C15orf53Q8NAA6 179 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 PATE1Q8WXA2 126 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 EEF1AKMT3Q96AZ1 226 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 ARID1AO14497 2285 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 PRR33A8MZF0 331 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 SCRT1Q9BWW7 348 aa3.86□□□□□ -1.79
SCN1A-220ENST00000641603 NDUFA3O95167 84 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 NXPH1P58417 271 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 C1orf53Q5VUE5 145 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 DPH3P1Q9H4G8 78 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 PNRC2Q9NPJ4 139 aaKnown RBP3.85□□□□□ -1.79
SCN1A-220ENST00000641603 TRAV12-1A0A0B4J245 112 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV1-69DA0A0B4J2H0 117 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 SUMO2P61956 95 aaKnown RBP3.85□□□□□ -1.79
SCN1A-220ENST00000641603 PLAURQ03405 335 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 C12orf74Q32Q52 190 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 CCL4L1Q8NHW4 92 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 CACNA1CQ13936 2221 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 LEPROTO15243 131 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV4-39P01824 125 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 ZNF747Q9BV97 191 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 UBL5Q9BZL1 73 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 FAM60AQ9NP50 221 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 RPUSD1Q9UJJ7 312 aaKnown RBP3.85□□□□□ -1.79
SCN1A-220ENST00000641603 KNCNA6PVL3 124 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 SPRY3O43610 288 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 CD55P08174 381 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 NPC2P61916 151 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 DEFB103AP81534 67 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 ZNF329Q86UD4 541 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 IGFBPL1Q8WX77 278 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 PAPPA2Q9BXP8 1791 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 NPFFO15130 113 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 F8VRH5 84 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 UBE2L6O14933 153 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 CSRP1P21291 193 aaKnown RBP3.85□□□□□ -1.79
SCN1A-220ENST00000641603 OOSP1A8MZH6 123 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 VWC2LB2RUY7 222 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 IGLL5B9A064 214 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 LINC01619G3V211 115 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 GFRA3O60609 400 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 SS18L2Q9UHA2 77 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 ARID1BQ8NFD5 2236 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-220ENST00000641603 BTAF1O14981 1849 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 TRGV11A0A075B6L2 103 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 ETV2O00321 342 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-220ENST00000641603 UCN2Q96RP3 112 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 PRDM6Q9NQX0 595 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 ZDHHC16Q969W1 377 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 C21orf62Q9NYP8 219 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 CKAP5Q14008 2032 aa3.85□□□□□ -1.79
SCN1A-220ENST00000641603 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 NPIPB5A8MRT5 1133 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 FAM214BQ7L5A3 538 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 SIP14410 1827 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 IL17RELQ6ZVW7 336 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 PARP14Q460N5 1801 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 TAF1P21675 1872 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 C15orf62A8K5M9 175 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 CRXO43186 299 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-220ENST00000641603 Q8NFD4 153 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 C4orf51C9J302 202 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 PTH2Q96A98 100 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 VSIG2Q96IQ7 327 aa3.84□□□□□ -1.79
SCN1A-220ENST00000641603 DUSP14O95147 198 aaKnown RBP3.84□□□□□ -1.79
SCN1A-220ENST00000641603 TMEM167AQ8TBQ9 72 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms