RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 PLXDC1Q8IUK5 500 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 NRGNQ92686 78 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 DAZAP1Q96EP5 407 aaKnown RBP5.58□□□□□ -1.52
SCN1A-213ENST00000636759 HIGD1BQ9P298 99 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 IGLV3-12A0A075B6K2 115 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 C15orf62A8K5M9 175 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 IGLV2-8P01709 118 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 ZNF688P0C7X2 276 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 RSPO1Q2MKA7 263 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-213ENST00000636759 SLC25A53Q5H9E4 307 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 RHBDD2Q6NTF9 364 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 MIR17HGQ75NE6 70 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 CEND1Q8N111 149 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 DLX4Q92988 240 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-213ENST00000636759 PGLYRP4Q96LB8 373 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 C18orf15Q96N68 181 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 FAM173AQ9BQD7 235 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 SLC25A10Q9UBX3 287 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-213ENST00000636759 HEATR1Q9H583 2144 aaKnown RBP5.58□□□□□ -1.52
SCN1A-213ENST00000636759 KMT2EQ8IZD2 1858 aa5.58□□□□□ -1.52
SCN1A-213ENST00000636759 DUX1O43812 170 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 TGFAP01135 160 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 MYF5P13349 255 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 RRN3P1Q2M238 152 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 ASPHD1Q5U4P2 390 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 LYRM7Q5U5X0 104 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 PEAR1Q5VY43 1037 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-213ENST00000636759 DRAM1Q8N682 238 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 Q8N7P7 452 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 NFAM1Q8NET5 270 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-213ENST00000636759 OXGR1Q96P68 337 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 CDX2Q99626 313 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-213ENST00000636759 PRRG4Q9BZD6 226 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 PRO0461Q9UI25 63 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 LSM4Q9Y4Z0 139 aaKnown RBP5.57□□□□□ -1.52
SCN1A-213ENST00000636759 A0A1B0GXF2 115 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 SMIM9A6NGZ8 99 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 MGST3O14880 152 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 SRD5A1P18405 259 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 CXCL12P48061 93 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 C12orf74Q32Q52 190 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 C8orf46Q8TAG6 207 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 UBALD1Q8TB05 177 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 KIR2DL4Q99706 377 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 CEP290O15078 2479 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 IL4P05112 153 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 EVI2AP22794 236 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 FGF12P61328 243 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 PHLDA1Q8WV24 401 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-213ENST00000636759 FBXL15Q9H469 300 aa5.57□□□□□ -1.52
SCN1A-213ENST00000636759 AMMECR1Q9Y4X0 333 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-213ENST00000636759 DIDO1Q9BTC0 2240 aaKnown RBP5.57□□□□□ -1.52
SCN1A-213ENST00000636759 IGLV3-32A0A0A0MS00 114 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 GGTLC3B5MD39 225 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 KLK10O43240 276 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 CA6P23280 308 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 GLRXP35754 106 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 DIAPH2-AS1Q14236 149 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 Q6ZS92 163 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 PPP1R27Q86WC6 154 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 TEN1Q86WV5 123 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 RPRMLQ8N4K4 120 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 IGF2BP2-AS1Q96M15 143 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 HIST1H4GQ99525 98 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 KLF12Q9Y4X4 402 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 LOC107984156A0A0G2JMH3 177 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 FAM90A9PA6NNJ1 464 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 ZIC3O60481 467 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 P01737 135 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 FOXL2NBQ6ZUU3 175 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 ARL17AQ8IVW1 177 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 RBMXL3Q8N7X1 1067 aaKnown RBP5.56□□□□□ -1.52
SCN1A-213ENST00000636759 SAP25Q8TEE9 199 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 SIT1Q9Y3P8 196 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 PSMB2P49721 201 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 MFAP4P55083 255 aa5.56□□□□□ -1.52
SCN1A-213ENST00000636759 UBE2L3P68036 154 aaKnown RBP5.56□□□□□ -1.52
SCN1A-213ENST00000636759 TRAV8-2A0A0B4J237 113 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 A0A1W2PNR3 127 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 A8MWV9 139 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 H3BVH4 76 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 K7EMI3 77 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 DNPH1O43598 174 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 SRYQ05066 204 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 FHL3Q13643 280 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 POU2AF1Q16633 256 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 PMS2CLQ68D20 193 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 RBPMS2Q6ZRY4 209 aaKnown RBP5.55□□□□□ -1.52
SCN1A-213ENST00000636759 NFE4Q86UQ8 179 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 FADS6Q8N9I5 356 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 DNAJC30Q96LL9 226 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 RPP21Q9H633 154 aaKnown RBP5.55□□□□□ -1.52
SCN1A-213ENST00000636759 TCF19Q9Y242 345 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 UNC13CQ8NB66 2214 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 ABCA7Q8IZY2 2146 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 TMSB15BA0A087X1C1 80 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 KRTAP27-1Q3LI81 207 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 CFAP126Q5VTH2 177 aa5.55□□□□□ -1.52
SCN1A-213ENST00000636759 MBNL2Q5VZF2 373 aaKnown RBP5.55□□□□□ -1.52
SCN1A-213ENST00000636759 OR13C6PQ8NH95 151 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms