RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 IL4P05112 153 aa13.66□□□□□ -0.22
CLN3-243ENST00000635973 RBPMS2Q6ZRY4 209 aaKnown RBP13.66□□□□□ -0.22
CLN3-243ENST00000635973 TRGV9Q99603 122 aa13.66□□□□□ -0.22
CLN3-243ENST00000635973 C11orf1Q9H5F2 150 aa13.66□□□□□ -0.22
CLN3-243ENST00000635973 SMPXQ9UHP9 88 aa13.66□□□□□ -0.22
CLN3-243ENST00000635973 IGHV3OR16-13A0A075B7E8 117 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 IGHV3-74A0A0B4J1X5 117 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 IZUMO1RA6ND01 250 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 E5RGE8 158 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 CST7O76096 145 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 NPPCP23582 126 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 ZNF90Q03938 601 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 SLC38A11Q08AI6 406 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 FCN2Q15485 313 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 LAMTOR1Q6IAA8 161 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 TMEM217Q8N7C4 229 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 THAP8Q8NA92 274 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 OR51G1Q8NGK1 321 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 RHPN1-AS1Q9BWJ2 59 aa13.65□□□□□ -0.22
CLN3-243ENST00000635973 IGKV1D-37A0A075B6S9 117 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 PSG1P11464 419 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 CXCL3P19876 107 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 SULT1A1P50225 295 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 OR2F1Q13607 317 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 TMEM144Q7Z5S9 345 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 GTSCR1Q86UQ5 136 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 TMEM61Q8N0U2 210 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 LILRB2Q8N423 598 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 TMEM252Q8N6L7 170 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 WDR89Q96FK6 387 aaPredicted RBP13.64□□□□□ -0.23
CLN3-243ENST00000635973 PBDC1Q9BVG4 233 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 TMEM231Q9H6L2 316 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 OR5AC2Q9NZP5 309 aa13.64□□□□□ -0.23
CLN3-243ENST00000635973 IGHV3-66A0A0C4DH42 116 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 A0A1W2PS18 150 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 IGSF23A1L1A6 192 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 FNDC10F2Z333 226 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 CHEK1O14757 476 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 HNRNPCP07910 306 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLN3-243ENST00000635973 LYZP61626 148 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 HBG1P69891 147 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 HBG2P69892 147 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 ARL16Q0P5N6 197 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 OR11H7Q8NGC8 314 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 MUC7Q8TAX7 377 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 ST8SIA2Q92186 375 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 RNF125Q96EQ8 232 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 GGACTQ9BVM4 153 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 SLC25A31Q9H0C2 315 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 RABAC1Q9UI14 185 aa13.63□□□□□ -0.23
CLN3-243ENST00000635973 IGKV1OR2-108A0A075B7D4 117 aa13.62□□□□□ -0.23
CLN3-243ENST00000635973 TRAV25A0A0B4J276 109 aa13.62□□□□□ -0.23
CLN3-243ENST00000635973 MPC2O95563 127 aa13.62□□□□□ -0.23
CLN3-243ENST00000635973 IGHV4-30-4P0DP06 118 aa13.62□□□□□ -0.23
CLN3-243ENST00000635973 P2RY1P47900 373 aa13.62□□□□□ -0.23
CLN3-243ENST00000635973 GRAMD2BQ96HH9 432 aa13.62□□□□□ -0.23
CLN3-243ENST00000635973 NPVFQ9HCQ7 196 aa13.62□□□□□ -0.23
CLN3-243ENST00000635973 H0YIZ8 118 aa13.61□□□□□ -0.23
CLN3-243ENST00000635973 APOHP02749 345 aaPredicted RBP13.61□□□□□ -0.23
CLN3-243ENST00000635973 USF2Q15853 346 aaPredicted RBP13.61□□□□□ -0.23
CLN3-243ENST00000635973 BPIFCQ8NFQ6 507 aa13.61□□□□□ -0.23
CLN3-243ENST00000635973 RNF2Q99496 336 aa13.61□□□□□ -0.23
CLN3-243ENST00000635973 CFDP00746 253 aaPredicted RBP13.6□□□□□ -0.23
CLN3-243ENST00000635973 CRYBB3P26998 211 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 S100A11P31949 105 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 CD81P60033 236 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 RPL11P62913 178 aaKnown RBP13.6□□□□□ -0.23
CLN3-243ENST00000635973 EWSR1Q01844 656 aaKnown RBP eCLIP13.6□□□□□ -0.23
CLN3-243ENST00000635973 TEPPQ6URK8 271 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 CYP2G1PQ6ZSU1 146 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 TCF24Q7RTU0 167 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 Q8N1Y9 231 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 THAP6Q8TBB0 222 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 PPP1R14BQ96C90 147 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 SPAG8Q99932 426 aaPredicted RBP13.6□□□□□ -0.23
CLN3-243ENST00000635973 TMEM147Q9BVK8 224 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 VSIRQ9H7M9 311 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 TUBA4BQ9H853 241 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 UQCC1Q9NVA1 299 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 MBD2Q9UBB5 411 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 PFDN2Q9UHV9 154 aa13.6□□□□□ -0.23
CLN3-243ENST00000635973 IGKV3-7A0A075B6H7 116 aa13.59□□□□□ -0.23
CLN3-243ENST00000635973 UBE2L5PA0A1B0GUS4 154 aa13.59□□□□□ -0.23
CLN3-243ENST00000635973 ZNF785A8K8V0 405 aa13.59□□□□□ -0.23
CLN3-243ENST00000635973 CD5P06127 495 aa13.59□□□□□ -0.23
CLN3-243ENST00000635973 EIF2B2P49770 351 aaKnown RBP13.59□□□□□ -0.23
CLN3-243ENST00000635973 STAB2Q8WWQ8 2551 aa13.58□□□□□ -0.24
CLN3-243ENST00000635973 A8MZ25 164 aa13.58□□□□□ -0.24
CLN3-243ENST00000635973 TSPAN4O14817 238 aa13.58□□□□□ -0.24
CLN3-243ENST00000635973 GIPP09681 153 aaPredicted RBP13.58□□□□□ -0.24
CLN3-243ENST00000635973 LYL1P12980 280 aa13.58□□□□□ -0.24
CLN3-243ENST00000635973 GATA2P23769 480 aaPredicted RBP13.58□□□□□ -0.24
CLN3-243ENST00000635973 NUP62P37198 522 aaPredicted RBP13.58□□□□□ -0.24
CLN3-243ENST00000635973 BAXQ07812 192 aa13.58□□□□□ -0.24
CLN3-243ENST00000635973 RAB31Q13636 194 aa13.58□□□□□ -0.24
CLN3-243ENST00000635973 ZNF546Q86UE3 836 aa13.58□□□□□ -0.24
CLN3-243ENST00000635973 ASB13Q8WXK3 278 aa13.58□□□□□ -0.24
CLN3-243ENST00000635973 NEURL2Q9BR09 285 aa13.58□□□□□ -0.24
CLN3-243ENST00000635973 DFFBO76075 338 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 LINC00869P0C866 280 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms