RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 RAB26Q9ULW5 256 aa10.34□□□□□ -0.75
PNKP-218ENST00000625299 TOMM40O96008 361 aa10.33□□□□□ -0.76
PNKP-218ENST00000625299 SPCS3P61009 180 aa10.33□□□□□ -0.76
PNKP-218ENST00000625299 RNASE12Q5GAN4 147 aaKnown RBP10.33□□□□□ -0.76
PNKP-218ENST00000625299 SLC24A4Q8NFF2 622 aa10.33□□□□□ -0.76
PNKP-218ENST00000625299 KLK11Q9UBX7 282 aa10.33□□□□□ -0.76
PNKP-218ENST00000625299 CEBPZOSA8MTT3 80 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 F5H768 121 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 NXPH3O95157 252 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 DEFB130BP0DP73 79 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 DEFB130AP0DP74 79 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 PSG1P11464 419 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 PSMB3P49720 205 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 ZNF79Q15937 498 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 C2orf83Q53S99 150 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 FAM78BQ5VT40 261 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 ETFRF1Q6IPR1 90 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 EBLN2Q6P2I7 272 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 RNASEH2CQ8TDP1 164 aaKnown RBP10.32□□□□□ -0.76
PNKP-218ENST00000625299 RNF125Q96EQ8 232 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 ZNF486Q96H40 463 aaPredicted RBP10.32□□□□□ -0.76
PNKP-218ENST00000625299 COPZ2Q9P299 210 aa10.32□□□□□ -0.76
PNKP-218ENST00000625299 NUP62P37198 522 aaPredicted RBP10.31□□□□□ -0.76
PNKP-218ENST00000625299 RPS19P39019 145 aaKnown RBP10.31□□□□□ -0.76
PNKP-218ENST00000625299 CCL18P55774 89 aa10.31□□□□□ -0.76
PNKP-218ENST00000625299 LSM3P62310 102 aaKnown RBP10.31□□□□□ -0.76
PNKP-218ENST00000625299 GPR146Q96CH1 333 aa10.31□□□□□ -0.76
PNKP-218ENST00000625299 SMIM31A0A1B0GVY4 71 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 PRM2P04554 102 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 RNASE10Q5GAN6 216 aaKnown RBP10.3□□□□□ -0.76
PNKP-218ENST00000625299 SPATA31B1PQ5VZV4 182 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 CCDC71LQ8N9Z2 235 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 OR52E5Q8NH55 327 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 TMEM170AQ8WVE7 144 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 CLUHP3Q96NS8 147 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.3□□□□□ -0.76
PNKP-218ENST00000625299 COMMD3Q9UBI1 195 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 PFDN2Q9UHV9 154 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 LINC00588Q9Y4M8 146 aa10.3□□□□□ -0.76
PNKP-218ENST00000625299 DMBT1Q9UGM3 2413 aaPredicted RBP10.29□□□□□ -0.76
PNKP-218ENST00000625299 ZNF705GA8MUZ8 300 aaPredicted RBP10.29□□□□□ -0.76
PNKP-218ENST00000625299 SOCS3O14543 225 aa10.29□□□□□ -0.76
PNKP-218ENST00000625299 UCP1P25874 307 aa10.29□□□□□ -0.76
PNKP-218ENST00000625299 ALDH3B2P48448 385 aa10.29□□□□□ -0.76
PNKP-218ENST00000625299 CLINT1Q14677 625 aa10.29□□□□□ -0.76
PNKP-218ENST00000625299 PPP1R14BQ96C90 147 aa10.29□□□□□ -0.76
PNKP-218ENST00000625299 CACNG5Q9UF02 275 aa10.29□□□□□ -0.76
PNKP-218ENST00000625299 A0A0J9YX75 114 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 LYRM9A8MSI8 78 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 EPM2AB3EWF7 344 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 PAX9P55771 341 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 KRTAP10-2P60368 255 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 LYZP61626 148 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 SUPT4H1P63272 117 aaKnown RBP10.28□□□□□ -0.76
PNKP-218ENST00000625299 SCGB2B2Q4G0G5 96 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 LHFPL1Q86WI0 220 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 FAM219AQ8IW50 185 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 IGF2BP2-AS1Q96M15 143 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 DOK5Q9P104 306 aa10.28□□□□□ -0.76
PNKP-218ENST00000625299 ZFP92A6NM28 416 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 ISLRO14498 428 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 OR5AC1P0C628 307 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 DLK1P80370 383 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 MEF2DQ14814 521 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 FCN2Q15485 313 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 AARDQ4LEZ3 155 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 OR8G2PQ6IF36 304 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 OR4C16Q8NGL9 310 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 OR13C8Q8NGS7 320 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 ZFAND1Q8TCF1 268 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 RNF141Q8WVD5 230 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 C16orf92Q96LL3 132 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 C20orf173Q96LM9 149 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 ABHD1Q96SE0 405 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 RPRMQ9NS64 109 aa10.27□□□□□ -0.77
PNKP-218ENST00000625299 INSP01308 110 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 APOA1P02647 267 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 CD3DP04234 171 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 ATP5G1P05496 136 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 ATP5G3P48201 142 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 ZNF90Q03938 601 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 KLF9Q13886 244 aaPredicted RBP10.26□□□□□ -0.77
PNKP-218ENST00000625299 SPINK13Q1W4C9 94 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 SSX7Q7RTT5 188 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 NOXA1Q86UR1 476 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 OR8I2Q8N0Y5 310 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 ARRDC1Q8N5I2 433 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 LHFPL5Q8TAF8 219 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 MARCH1Q8TCQ1 289 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 TMEM222Q9H0R3 208 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 Q9H521 79 aa10.26□□□□□ -0.77
PNKP-218ENST00000625299 M0R2Z0 102 aa10.25□□□□□ -0.77
PNKP-218ENST00000625299 TNFAIP8O95379 198 aa10.25□□□□□ -0.77
PNKP-218ENST00000625299 CDS2O95674 445 aa10.25□□□□□ -0.77
PNKP-218ENST00000625299 INAFM2P0DMQ5 153 aa10.25□□□□□ -0.77
PNKP-218ENST00000625299 ELK1P19419 428 aa10.25□□□□□ -0.77
PNKP-218ENST00000625299 OR2F1Q13607 317 aa10.25□□□□□ -0.77
PNKP-218ENST00000625299 NMSQ5H8A3 153 aa10.25□□□□□ -0.77
PNKP-218ENST00000625299 TMEM268Q5VZI3 342 aa10.25□□□□□ -0.77
PNKP-218ENST00000625299 OR4D10Q8NGI6 311 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms