RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CSN1S1P47710 185 aa12.54□□□□□ -0.4
CPSF1-213ENST00000620219 RPL19P84098 196 aaKnown RBP12.53□□□□□ -0.4
CPSF1-213ENST00000620219 C15orf32Q32M92 178 aa12.53□□□□□ -0.4
CPSF1-213ENST00000620219 ZNF562Q6V9R5 426 aa12.53□□□□□ -0.4
CPSF1-213ENST00000620219 LYPD6BQ8NI32 183 aa12.53□□□□□ -0.4
CPSF1-213ENST00000620219 C1orf122Q6ZSJ8 110 aa12.53□□□□□ -0.4
CPSF1-213ENST00000620219 SCO2A0A1W2PP80 73 aa12.53□□□□□ -0.4
CPSF1-213ENST00000620219 IGLC7A0M8Q6 106 aa12.53□□□□□ -0.4
CPSF1-213ENST00000620219 SIRPDQ9H106 197 aa12.53□□□□□ -0.4
CPSF1-213ENST00000620219 UTP20O75691 2785 aaKnown RBP12.53□□□□□ -0.4
CPSF1-213ENST00000620219 TGIF2-C20orf24A0A0A6YYL0 155 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 ATP5G2Q06055 141 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 KCNIP4Q6PIL6 250 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 AAMDCQ9H7C9 122 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 MOB4Q9Y3A3 225 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 TRAV34A0A0B4J273 112 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 PDE6DO43924 150 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 AMY1AP04745 511 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 TCL1AP56279 114 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 LDLRAD2Q5SZI1 272 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 BIN3Q9NQY0 253 aa12.52□□□□□ -0.4
CPSF1-213ENST00000620219 TRAV20A0A0B4J274 112 aa12.52□□□□□ -0.41
CPSF1-213ENST00000620219 CLEC3BP05452 202 aa12.52□□□□□ -0.41
CPSF1-213ENST00000620219 NDUFA6P56556 154 aa12.52□□□□□ -0.41
CPSF1-213ENST00000620219 CD81P60033 236 aa12.52□□□□□ -0.41
CPSF1-213ENST00000620219 SNRPEP62304 92 aaKnown RBP12.52□□□□□ -0.41
CPSF1-213ENST00000620219 DEFB113Q30KQ7 82 aa12.52□□□□□ -0.41
CPSF1-213ENST00000620219 HIST1H2BAQ96A08 127 aa12.52□□□□□ -0.41
CPSF1-213ENST00000620219 NOL4LQ96MY1 436 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-213ENST00000620219 CLDN34H7C241 214 aa12.52□□□□□ -0.41
CPSF1-213ENST00000620219 HAX1O00165 279 aa12.52□□□□□ -0.41
CPSF1-213ENST00000620219 PIP4P2Q8N4L2 257 aa12.52□□□□□ -0.41
CPSF1-213ENST00000620219 BEX4Q9NWD9 120 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-213ENST00000620219 RAB5AP20339 215 aa12.51□□□□□ -0.41
CPSF1-213ENST00000620219 C11orf44Q8N8P7 122 aa12.51□□□□□ -0.41
CPSF1-213ENST00000620219 SMDT1Q9H4I9 107 aa12.51□□□□□ -0.41
CPSF1-213ENST00000620219 K7EQM0 130 aa12.51□□□□□ -0.41
CPSF1-213ENST00000620219 ELOA3CA0A087WX78 387 aaPredicted RBP12.51□□□□□ -0.41
CPSF1-213ENST00000620219 LCNL1Q6ZST4 164 aa12.51□□□□□ -0.41
CPSF1-213ENST00000620219 S100A2P29034 98 aa12.51□□□□□ -0.41
CPSF1-213ENST00000620219 S100A7P31151 101 aa12.51□□□□□ -0.41
CPSF1-213ENST00000620219 WFDC3Q8IUB2 231 aa12.51□□□□□ -0.41
CPSF1-213ENST00000620219 TIMM8BQ9Y5J9 83 aaPredicted RBP12.51□□□□□ -0.41
CPSF1-213ENST00000620219 BSNQ9UPA5 3926 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 CGB1A6NKQ9 187 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 OVOL3O00110 214 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 ZNF137PP52743 207 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 BPIFA4PQ86YQ2 179 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 HRNRQ86YZ3 2850 aaPredicted RBP12.5□□□□□ -0.41
CPSF1-213ENST00000620219 NBEAP1P0C6P0 100 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 FAM3BP58499 235 aaPredicted RBP12.5□□□□□ -0.41
CPSF1-213ENST00000620219 IGKV1OR2-108A0A075B7D4 117 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 TRAV41A0A0B4J266 112 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 PPP5D1E7EU14 171 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 STXBP6Q8NFX7 210 aa12.5□□□□□ -0.41
CPSF1-213ENST00000620219 TRAV1-1A0A0B4J248 108 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 J3KRW8 73 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 NDUFB8O95169 186 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 STAG3L2P0CL84 134 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 STAG3L3P0CL85 134 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 FAM90A2PQ658T7 463 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 S100A9P06702 114 aaKnown RBP12.49□□□□□ -0.41
CPSF1-213ENST00000620219 GALR1P47211 349 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 Q71RC1 249 aaPredicted RBP12.49□□□□□ -0.41
CPSF1-213ENST00000620219 CENPVQ7Z7K6 275 aaPredicted RBP12.49□□□□□ -0.41
CPSF1-213ENST00000620219 MRPL36Q9P0J6 103 aaKnown RBP12.49□□□□□ -0.41
CPSF1-213ENST00000620219 SORL1Q92673 2214 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 BAGE2Q86Y30 109 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 EEF1AKMT3Q96AZ1 226 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 RNF125Q96EQ8 232 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 SCRT1Q9BWW7 348 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 TFPI2P48307 235 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 SLC35B1P78383 322 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 FAM210BQ96KR6 192 aa12.49□□□□□ -0.41
CPSF1-213ENST00000620219 GNG5P63218 68 aa12.48□□□□□ -0.41
CPSF1-213ENST00000620219 PNRC1Q12796 327 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-213ENST00000620219 TMEM249Q2WGJ8 235 aa12.48□□□□□ -0.41
CPSF1-213ENST00000620219 HSPB9Q9BQS6 159 aa12.48□□□□□ -0.41
CPSF1-213ENST00000620219 PPP1R14DQ9NXH3 145 aa12.48□□□□□ -0.41
CPSF1-213ENST00000620219 FN1P02751 2386 aaKnown RBP12.48□□□□□ -0.41
CPSF1-213ENST00000620219 TRAV30A0A087WSZ9 112 aa12.48□□□□□ -0.41
CPSF1-213ENST00000620219 ZNF705GA8MUZ8 300 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-213ENST00000620219 BMPR1BO00238 502 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 RABAC1Q9UI14 185 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 IGHV4-59P01825 116 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 DEFB112Q30KQ8 113 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 C19orf24Q9BVV8 132 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 MRPL32Q9BYC8 188 aaKnown RBP12.47□□□□□ -0.41
CPSF1-213ENST00000620219 CT45A10P0DMU9 189 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 PRNTQ86SH4 94 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 SDF2L1Q9HCN8 221 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 YTHDF2Q9Y5A9 579 aaKnown RBP12.47□□□□□ -0.41
CPSF1-213ENST00000620219 BLCAPP62952 87 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 CYB5R2Q6BCY4 276 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 DPF1Q92782 380 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 ELOVL1Q9BW60 279 aa12.47□□□□□ -0.41
CPSF1-213ENST00000620219 NDPQ00604 133 aa12.46□□□□□ -0.41
CPSF1-213ENST00000620219 C10orf91Q5T1B1 145 aa12.46□□□□□ -0.41
CPSF1-213ENST00000620219 BCL6BQ8N143 479 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-213ENST00000620219 LOC105371267A0A1B0GV96 52 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms