RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 Q9H3A6 140 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 CEP192Q8TEP8 1941 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 ZFHX2Q9C0A1 2572 aaPredicted RBP10.25□□□□□ -0.77
LIG1-221ENST00000613670 TCRBV4S1A1TA0A5B7 111 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 IGHV1-46P01743 117 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 APOHP02749 345 aaPredicted RBP10.25□□□□□ -0.77
LIG1-221ENST00000613670 C17orf58Q2M2W7 97 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 TIMM23BQ5SRD1 257 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 ONECUT1Q9UBC0 465 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 ZNF257Q9Y2Q1 563 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 RNF114Q9Y508 228 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 LIPFP07098 398 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 ARF6P62330 175 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 SSBP2P81877 361 aaPredicted RBP10.25□□□□□ -0.77
LIG1-221ENST00000613670 TMEM249Q2WGJ8 235 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 MBNL2Q5VZF2 373 aaKnown RBP10.25□□□□□ -0.77
LIG1-221ENST00000613670 CIARTQ8N365 385 aaPredicted RBP10.25□□□□□ -0.77
LIG1-221ENST00000613670 IGKV1OR2-108A0A075B7D4 117 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 LOXL4Q96JB6 756 aa10.25□□□□□ -0.77
LIG1-221ENST00000613670 NAA38Q9BRA0 125 aaKnown RBP10.25□□□□□ -0.77
LIG1-221ENST00000613670 IGHV3-35A0A0C4DH35 117 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 GAGE10A6NGK3 116 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 NCBP2LA6PVI3 153 aaKnown RBP10.24□□□□□ -0.77
LIG1-221ENST00000613670 KLK10O43240 276 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 TDGF1P13385 188 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 CD59P13987 128 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 RPL24P83731 157 aaKnown RBP10.24□□□□□ -0.77
LIG1-221ENST00000613670 UBE2V1Q13404 147 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 SMIM15Q7Z3B0 74 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 EXOC3-AS1Q8N2X6 119 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 TMEM116Q8NCL8 245 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 A0A087X0K7 114 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 FCGR2BP31994 310 aaPredicted RBP10.24□□□□□ -0.77
LIG1-221ENST00000613670 ATP5IP56385 69 aaPredicted RBP10.24□□□□□ -0.77
LIG1-221ENST00000613670 TMPRSS3P57727 454 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 SCGB2A2Q13296 93 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 TM4SF20Q53R12 229 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 RBPMS2Q6ZRY4 209 aaKnown RBP10.24□□□□□ -0.77
LIG1-221ENST00000613670 HIF1ANQ9NWT6 349 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 SLC25A15Q9Y619 301 aa10.24□□□□□ -0.77
LIG1-221ENST00000613670 F11RQ9Y624 299 aaKnown RBP10.24□□□□□ -0.77
LIG1-221ENST00000613670 COL5A1P20908 1838 aaPredicted RBP10.23□□□□□ -0.77
LIG1-221ENST00000613670 DLX1P56177 255 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 AMMECR1LQ6DCA0 310 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 RPRMLQ8N4K4 120 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 FBXL15Q9H469 300 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 NGBQ9NPG2 151 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 GNG7O60262 68 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 PRSS1P07477 247 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 FXYD7P58549 80 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 GAGE1Q13065 139 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 ZNF329Q86UD4 541 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 COX11Q9Y6N1 276 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 NCKAP5O14513 1909 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 BDP1A6H8Y1 2624 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 A0A1W2PNU3 283 aaPredicted RBP10.23□□□□□ -0.77
LIG1-221ENST00000613670 C16orf97H3BN30 126 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 SP9P0CG40 484 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 CD40P25942 277 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 ARL3P36405 182 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 PLSCR4Q9NRQ2 329 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 MRPL27Q9P0M9 148 aaKnown RBP10.23□□□□□ -0.77
LIG1-221ENST00000613670 HILPDAQ9Y5L2 63 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 LINC00312Q9Y6C7 94 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 TANC2Q9HCD6 1990 aa10.23□□□□□ -0.77
LIG1-221ENST00000613670 K7ERU9 68 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 MC5RP33032 325 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 COMPP49747 757 aaPredicted RBP10.22□□□□□ -0.77
LIG1-221ENST00000613670 EBLN2Q6P2I7 272 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 SLC25A2Q9BXI2 301 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 IGHV3OR16-8A0A075B7F1 116 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 SMIM27A0A1W2PRY6 76 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 ORM1P02763 201 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 C1orf229Q6ZS94 237 aaPredicted RBP10.22□□□□□ -0.77
LIG1-221ENST00000613670 MRPL52Q86TS9 123 aaKnown RBP10.22□□□□□ -0.77
LIG1-221ENST00000613670 Q8N7P7 452 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 TMEM186Q96B77 213 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 GAFA1Q96PS6 74 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 KIAA1549Q9HCM3 1950 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 A0A1B0GUT8 65 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 CCL25O15444 150 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 DIAPH2-AS1Q14236 149 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 S100A7AQ86SG5 101 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 TMUB1Q9BVT8 246 aa10.22□□□□□ -0.77
LIG1-221ENST00000613670 M0R296 226 aa10.21□□□□□ -0.77
LIG1-221ENST00000613670 TM4SF5O14894 197 aa10.21□□□□□ -0.77
LIG1-221ENST00000613670 C1orf185Q5T7R7 199 aa10.21□□□□□ -0.77
LIG1-221ENST00000613670 ORAOV1Q8WV07 137 aa10.21□□□□□ -0.77
LIG1-221ENST00000613670 C18orf15Q96N68 181 aa10.21□□□□□ -0.77
LIG1-221ENST00000613670 TP73-AS1Q9UF72 201 aa10.21□□□□□ -0.77
LIG1-221ENST00000613670 SYS1-DBNDD2H3BUS1 97 aa10.21□□□□□ -0.78
LIG1-221ENST00000613670 LINC00310P59036 64 aa10.21□□□□□ -0.78
LIG1-221ENST00000613670 WT1-ASQ06250 92 aa10.21□□□□□ -0.78
LIG1-221ENST00000613670 GFRALQ6UXV0 394 aa10.21□□□□□ -0.78
LIG1-221ENST00000613670 SLC25A48Q6ZT89 311 aaKnown RBP10.21□□□□□ -0.78
LIG1-221ENST00000613670 OR10AG1Q8NH19 301 aa10.21□□□□□ -0.78
LIG1-221ENST00000613670 SCNM1Q9BWG6 230 aa10.21□□□□□ -0.78
LIG1-221ENST00000613670 PPP1R14DQ9NXH3 145 aa10.21□□□□□ -0.78
LIG1-221ENST00000613670 EIF4EBP1Q13541 118 aaPredicted RBP10.21□□□□□ -0.78
LIG1-221ENST00000613670 H0YJW9 148 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 319.6 ms