RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 F8W735 103 aaPredicted RBP9.74□□□□□ -0.85
UPF1-208ENST00000600012 MPDU1O75352 247 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 IGLV1-40P01703 118 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 IGHG4P01861 327 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 GATA2P23769 480 aaPredicted RBP9.74□□□□□ -0.85
UPF1-208ENST00000600012 MFAP4P55083 255 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 Q56UQ5 140 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 C9orf66Q5T8R8 295 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 MIC13Q5XKP0 118 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 EIF5AL1Q6IS14 154 aaKnown RBP9.74□□□□□ -0.85
UPF1-208ENST00000600012 CYP2G1PQ6ZSU1 146 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 ZNF709Q8N972 641 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 TMEM116Q8NCL8 245 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 OR4X1Q8NH49 305 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 PXMP4Q9Y6I8 212 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 SORL1Q92673 2214 aa9.74□□□□□ -0.85
UPF1-208ENST00000600012 FAM223BA6NKX1 122 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 CLN5O75503 358 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 BRI3O95415 125 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 RPLP1P05386 114 aaKnown RBP9.73□□□□□ -0.85
UPF1-208ENST00000600012 IGLC1P0CG04 106 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 CDX1P47902 265 aaPredicted RBP9.73□□□□□ -0.85
UPF1-208ENST00000600012 ZNF90Q03938 601 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 ATP5G2Q06055 141 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 FOXE3Q13461 319 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 RAB31Q13636 194 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 TIGITQ495A1 244 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 FFAR4Q5NUL3 377 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 FAM223AQ8IWN6 122 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 RNF152Q8N8N0 203 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 BPIFCQ8NFQ6 507 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 ZNF502Q8TBZ5 544 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 VN1R17PQ8TDU5 208 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 EEF1AKMT3Q96AZ1 226 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 VSIRQ9H7M9 311 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 SLC45A2Q9UMX9 530 aa9.73□□□□□ -0.85
UPF1-208ENST00000600012 OR2T8A6NH00 312 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 GNG7O60262 68 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 YIF1AO95070 293 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 IGHV3-11P01762 117 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 ELANEP08246 267 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 PSMB8P28062 276 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 GPR183P32249 361 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 NPBWR1P48145 328 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 SULT1A2P50226 295 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 RAB9AP51151 201 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 RAB2AP61019 212 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 DEFB136Q30KP8 78 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 AKR1C8PQ5T2L2 129 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 STPG3Q8N7X2 389 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 CXorf58Q96LI9 332 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 CCDC140Q96MF4 163 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 PRR25Q96S07 402 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 TRGV9Q99603 122 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 STAB2Q8WWQ8 2551 aa9.72□□□□□ -0.85
UPF1-208ENST00000600012 SEC14L6B5MCN3 397 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 C3orf84H3BNL1 204 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 IGKV1-17P01599 117 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 LINC00869P0C866 280 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 RPL29P47914 159 aaKnown RBP9.71□□□□□ -0.86
UPF1-208ENST00000600012 FHITP49789 147 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 B2MP61769 119 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 PRR20EP86478 221 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 PRR20CP86479 221 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 PRR20DP86480 221 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 PRR20BP86481 221 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 PRR20AP86496 221 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 GCSAMLQ5JQS6 135 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 CLEC19AQ6UXS0 136 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 FAM213BQ8TBF2 198 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 C4orf3Q8WVX3 66 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 KCNIP2Q9NS61 270 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 SLC39A9Q9NUM3 307 aa9.71□□□□□ -0.86
UPF1-208ENST00000600012 ZNF705EA8MWA4 302 aaPredicted RBP9.7□□□□□ -0.86
UPF1-208ENST00000600012 EIF3GO75821 320 aaKnown RBP eCLIP9.7□□□□□ -0.86
UPF1-208ENST00000600012 FCGR2BP31994 310 aaPredicted RBP9.7□□□□□ -0.86
UPF1-208ENST00000600012 SERF2P84101 59 aa9.7□□□□□ -0.86
UPF1-208ENST00000600012 FHL3Q13643 280 aa9.7□□□□□ -0.86
UPF1-208ENST00000600012 TMEM41BQ5BJD5 291 aa9.7□□□□□ -0.86
UPF1-208ENST00000600012 RNF141Q8WVD5 230 aa9.7□□□□□ -0.86
UPF1-208ENST00000600012 USMG5Q96IX5 58 aa9.7□□□□□ -0.86
UPF1-208ENST00000600012 TXN2Q99757 166 aa9.7□□□□□ -0.86
UPF1-208ENST00000600012 CHRDL1Q9BU40 450 aa9.7□□□□□ -0.86
UPF1-208ENST00000600012 RPRMQ9NS64 109 aa9.7□□□□□ -0.86
UPF1-208ENST00000600012 TRAV30A0A087WSZ9 112 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 TRBV7-1A0A0A6YYK4 115 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 UMAD1C9J7I0 102 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 PPP5D1E7EU14 171 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 TRBV12-3P01733 135 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 NMBP08949 121 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 SELENOTP62341 195 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 ZNF616Q08AN1 781 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 KIAA0141Q14154 515 aaPredicted RBP9.69□□□□□ -0.86
UPF1-208ENST00000600012 ACOT6Q3I5F7 207 aaPredicted RBP9.69□□□□□ -0.86
UPF1-208ENST00000600012 FAM122CQ6P4D5 195 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 Q6ZRG5 221 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 OR5B12Q96R08 314 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 GNB4Q9HAV0 340 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 DOK5Q9P104 306 aa9.69□□□□□ -0.86
UPF1-208ENST00000600012 ZNF256Q9Y2P7 627 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms