RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TNFRSF14Q92956 283 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 ASCL2Q99929 193 aa12.41□□□□□ -0.42
UPF1-204ENST00000596842 CEP295Q9C0D2 2601 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 FAM90A9PA6NNJ1 464 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 SLC25A17O43808 307 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 C10orf113Q5VZT2 155 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 KCNS1Q96KK3 526 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 SLC25A33Q9BSK2 321 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 SH2D7A6NKC9 451 aaPredicted RBP12.4□□□□□ -0.42
UPF1-204ENST00000596842 H3BUT2 72 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 ZNF324O75467 553 aaPredicted RBP12.4□□□□□ -0.42
UPF1-204ENST00000596842 IGLV1-44P01699 117 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 IGHG3P01860 377 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 TCF24Q7RTU0 167 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 IGLC2P0DOY2 106 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 IGLC3P0DOY3 106 aa12.4□□□□□ -0.42
UPF1-204ENST00000596842 TRAV30A0A087WSZ9 112 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 IGHV1-46P01743 117 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 GLRXP35754 106 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 TMEM249Q2WGJ8 235 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 C11orf52Q96A22 123 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 FLYWCH2Q96CP2 140 aaKnown RBP12.39□□□□□ -0.43
UPF1-204ENST00000596842 THYN1Q9P016 225 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 SLC25A10Q9UBX3 287 aaPredicted RBP12.39□□□□□ -0.43
UPF1-204ENST00000596842 RNASE2P10153 161 aaKnown RBP12.39□□□□□ -0.43
UPF1-204ENST00000596842 CA7P43166 264 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 TNXAQ16473 311 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 C1orf162Q8NEQ5 155 aaPredicted RBP12.39□□□□□ -0.43
UPF1-204ENST00000596842 ADTRPQ96IZ2 230 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 GAFA1Q96PS6 74 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 SFXN3Q9BWM7 321 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 SSUH2Q9Y2M2 353 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 SCGB2A1O75556 95 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 FCER1GP30273 86 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 CD69Q07108 199 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 SEM1Q6ZVN7 128 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 TSKUQ8WUA8 353 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 TPPP3Q9BW30 176 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 PRO3102Q9H379 93 aa12.39□□□□□ -0.43
UPF1-204ENST00000596842 HIGD1CA8MV81 97 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 C22orf46C9J442 243 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 ZNF788Q6ZQV5 615 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 RAB9BQ9NP90 201 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 A0A087X0K7 114 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 hADV38S2A0JD32 116 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 PGPA6NDG6 321 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 HLA-DQA1P01909 254 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 LINC00305Q7Z4B0 112 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 OR8B2Q96RD0 313 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 OSTCQ9NRP0 149 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 OR8B3Q8NGG8 313 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 OR1L8Q8NGR8 309 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 SRSF8Q9BRL6 282 aaKnown RBP12.38□□□□□ -0.43
UPF1-204ENST00000596842 TPSG1Q9NRR2 321 aa12.38□□□□□ -0.43
UPF1-204ENST00000596842 CHTOPQ9Y3Y2 248 aaKnown RBP12.38□□□□□ -0.43
UPF1-204ENST00000596842 A0A1W2PRD5 423 aa12.37□□□□□ -0.43
UPF1-204ENST00000596842 A0A1W2PRF3 423 aa12.37□□□□□ -0.43
UPF1-204ENST00000596842 A0A1W2PRM7 423 aa12.37□□□□□ -0.43
UPF1-204ENST00000596842 MT-ND6P03923 174 aa12.37□□□□□ -0.43
UPF1-204ENST00000596842 Q0VG73 95 aa12.37□□□□□ -0.43
UPF1-204ENST00000596842 KIR3DL3Q8N743 410 aa12.37□□□□□ -0.43
UPF1-204ENST00000596842 TLN1Q9Y490 2541 aaKnown RBP12.37□□□□□ -0.43
UPF1-204ENST00000596842 ZADH2Q8N4Q0 377 aa12.37□□□□□ -0.43
UPF1-204ENST00000596842 CLEC7AQ9BXN2 247 aa12.37□□□□□ -0.43
UPF1-204ENST00000596842 MRPL36Q9P0J6 103 aaKnown RBP12.37□□□□□ -0.43
UPF1-204ENST00000596842 RPUSD1Q9UJJ7 312 aaKnown RBP12.37□□□□□ -0.43
UPF1-204ENST00000596842 SLC25A2Q9BXI2 301 aa12.37□□□□□ -0.43
UPF1-204ENST00000596842 NUP35Q8NFH5 326 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 hDV102S1A0JD36 115 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 CNIH1O95406 144 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 IGLV2-8P01709 118 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 PGLYRP4Q96LB8 373 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 PEX7O00628 323 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 PSG9Q00887 426 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 WT1-ASQ06250 92 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 GUSBP1Q15486 140 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 TMEM116Q8NCL8 245 aa12.36□□□□□ -0.43
UPF1-204ENST00000596842 RELNP78509 3460 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 K7EQM0 130 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 DLL1O00548 723 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 SLC25A34Q6PIV7 304 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 PDPNQ86YL7 162 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 C18orf32Q8TCD1 76 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 AKAP13Q12802 2813 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 TRBV9A0A0B4J1U6 114 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 IGHV2-70DA0A0C4DH43 119 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 FTH1P19P0C7X4 201 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 TIMM23BQ5SRD1 257 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 MUC15Q8N387 334 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 TRAV8-1A0A0A6YYK1 113 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 IZUMO1RA6ND01 250 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 ZNF138P52744 262 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 TBR1Q16650 682 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 COL6A6A6NMZ7 2263 aa12.35□□□□□ -0.43
UPF1-204ENST00000596842 TRAV9-1A0A075B6T8 112 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 A0A1W2PRE2 83 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 CGB3P0DN86 165 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 CGB7P0DN87 165 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 CKS1BP61024 79 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 SLC25A48Q6ZT89 311 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms