RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PRSS46E5RG02 174 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 H3BP45 60 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 UBE2CO00762 179 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 NUP62P37198 522 aaPredicted RBP12□□□□□ -0.49
TRIM28-206ENST00000595974 POLR2GP62487 172 aaKnown RBP eCLIP12□□□□□ -0.49
TRIM28-206ENST00000595974 IAH1Q2TAA2 248 aaPredicted RBP12□□□□□ -0.49
TRIM28-206ENST00000595974 SPANXN5Q5MJ07 72 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 MZT2BQ6NZ67 158 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 C16orf54Q6UWD8 224 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 WFDC3Q8IUB2 231 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 APRG1Q8IVJ8 170 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 GLMPQ8WWB7 406 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 RNF125Q96EQ8 232 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 TRGV9Q99603 122 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 RABAC1Q9UI14 185 aa12□□□□□ -0.49
TRIM28-206ENST00000595974 FAM240BA0A1B0GVZ2 78 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 SSSCA1O60232 199 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 ASAH1Q13510 395 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 ZNF846Q147U1 533 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 OR8G2PQ6IF36 304 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 Q6ZWC4 215 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 THAP8Q8NA92 274 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 STXBP6Q8NFX7 210 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 PFDN2Q9UHV9 154 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 TBC1D24Q9ULP9 559 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 TP53TG1Q9Y2A0 90 aa11.99□□□□□ -0.49
TRIM28-206ENST00000595974 AGRNO00468 2067 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 K7EQG2 157 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 BUB3O43684 328 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 H2AFB2P0C5Z0 115 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 LYL1P12980 280 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 AP2S1P53680 142 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-206ENST00000595974 ZNF90Q03938 601 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 STPG3Q8N7X2 389 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 ZBTB8BQ8NAP8 495 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-206ENST00000595974 ZNF431Q8TF32 576 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-206ENST00000595974 OVOL2Q9BRP0 275 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 BATF3Q9NR55 127 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 PSENENQ9NZ42 101 aa11.98□□□□□ -0.49
TRIM28-206ENST00000595974 IGKV1OR2-108A0A075B7D4 117 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 UPK1BO75841 260 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 SCGB1D2O95969 90 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 RPL35AP18077 110 aaKnown RBP11.97□□□□□ -0.49
TRIM28-206ENST00000595974 DEFB131AP59861 70 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 ZNF124Q15973 351 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 CASC10Q5T4H9 136 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 ACOT7LQ6ZUV0 252 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 FAM24BQ8N5W8 94 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 DCANP1Q8TF63 244 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 SMIM8Q96KF7 97 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 RAB40CQ96S21 281 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 PBDC1Q9BVG4 233 aa11.97□□□□□ -0.49
TRIM28-206ENST00000595974 SNRPGP15A8MWD9 76 aa11.96□□□□□ -0.49
TRIM28-206ENST00000595974 CFDP00746 253 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-206ENST00000595974 TAS2R30P59541 319 aa11.96□□□□□ -0.49
TRIM28-206ENST00000595974 LYZP61626 148 aa11.96□□□□□ -0.49
TRIM28-206ENST00000595974 AKR1C1Q04828 323 aa11.96□□□□□ -0.49
TRIM28-206ENST00000595974 DEFB135Q30KP9 77 aa11.96□□□□□ -0.49
TRIM28-206ENST00000595974 SEC22CQ9BRL7 303 aa11.96□□□□□ -0.49
TRIM28-206ENST00000595974 GSKIPQ9P0R6 139 aa11.96□□□□□ -0.49
TRIM28-206ENST00000595974 RCL1Q9Y2P8 373 aaKnown RBP11.96□□□□□ -0.49
TRIM28-206ENST00000595974 STARD9Q9P2P6 4700 aa11.95□□□□□ -0.5
TRIM28-206ENST00000595974 CCSO14618 274 aa11.95□□□□□ -0.5
TRIM28-206ENST00000595974 TSC22D2O75157 780 aa11.95□□□□□ -0.5
TRIM28-206ENST00000595974 TMEM14EPQ6UXP3 125 aa11.95□□□□□ -0.5
TRIM28-206ENST00000595974 SIGLEC15Q6ZMC9 328 aa11.95□□□□□ -0.5
TRIM28-206ENST00000595974 C12orf45Q8N5I9 185 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-206ENST00000595974 NRN1Q9NPD7 142 aa11.95□□□□□ -0.5
TRIM28-206ENST00000595974 SPRY2O43597 315 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 MBPP02686 304 aaPredicted RBP11.94□□□□□ -0.5
TRIM28-206ENST00000595974 ZNF688P0C7X2 276 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 PAX9P55771 341 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 DLK1P80370 383 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 OR2F1Q13607 317 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 C1orf194Q5T5A4 169 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 LEMD1Q68G75 181 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 TMEM144Q7Z5S9 345 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 IL17DQ8TAD2 202 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 ENKURQ8TC29 256 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 RNF183Q96D59 192 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 CSTL1Q9H114 145 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 FBXL17Q9UF56 701 aa11.94□□□□□ -0.5
TRIM28-206ENST00000595974 CSMD3Q7Z407 3707 aa11.93□□□□□ -0.5
TRIM28-206ENST00000595974 SMCO3A2RU48 225 aa11.93□□□□□ -0.5
TRIM28-206ENST00000595974 PMS2P5A8MQ11 134 aa11.93□□□□□ -0.5
TRIM28-206ENST00000595974 FAM25EA8MYX2 175 aa11.93□□□□□ -0.5
TRIM28-206ENST00000595974 FNDC10F2Z333 226 aa11.93□□□□□ -0.5
TRIM28-206ENST00000595974 BPIFCQ8NFQ6 507 aa11.93□□□□□ -0.5
TRIM28-206ENST00000595974 SEPSECSQ9HD40 501 aaKnown RBP11.93□□□□□ -0.5
TRIM28-206ENST00000595974 SLC45A2Q9UMX9 530 aa11.93□□□□□ -0.5
TRIM28-206ENST00000595974 C5orf51A6NDU8 294 aa11.92□□□□□ -0.5
TRIM28-206ENST00000595974 IL5P05113 134 aa11.92□□□□□ -0.5
TRIM28-206ENST00000595974 METTL15P1P0C7V9 234 aa11.92□□□□□ -0.5
TRIM28-206ENST00000595974 SNRPD3P62318 126 aaKnown RBP11.92□□□□□ -0.5
TRIM28-206ENST00000595974 STHQ8IWL8 128 aa11.92□□□□□ -0.5
TRIM28-206ENST00000595974 OR10P1Q8NGE3 313 aa11.92□□□□□ -0.5
TRIM28-206ENST00000595974 PPP1R14BQ96C90 147 aa11.92□□□□□ -0.5
TRIM28-206ENST00000595974 C7orf66A4D0T2 115 aa11.91□□□□□ -0.5
TRIM28-206ENST00000595974 CCNKO75909 580 aa11.91□□□□□ -0.5
TRIM28-206ENST00000595974 S100A7P31151 101 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms