RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 PRRT1Q99946 306 aa17.21■□□□□ 0.35
LSM4-202ENST00000593564 CTDSP2O14595 271 aa17.2■□□□□ 0.34
LSM4-202ENST00000593564 PSG1P11464 419 aa17.2■□□□□ 0.34
LSM4-202ENST00000593564 U3KQ87 197 aa17.2■□□□□ 0.34
LSM4-202ENST00000593564 CTDSPLO15194 276 aa17.19■□□□□ 0.34
LSM4-202ENST00000593564 IFNA10P01566 189 aa17.19■□□□□ 0.34
LSM4-202ENST00000593564 HLA-DRB4P13762 266 aa17.19■□□□□ 0.34
LSM4-202ENST00000593564 NUP62P37198 522 aaPredicted RBP17.19■□□□□ 0.34
LSM4-202ENST00000593564 NKX2-1P43699 371 aaPredicted RBP17.19■□□□□ 0.34
LSM4-202ENST00000593564 LINC00336Q6ZUF6 198 aa17.19■□□□□ 0.34
LSM4-202ENST00000593564 ZNF767PQ75MW2 155 aa17.19■□□□□ 0.34
LSM4-202ENST00000593564 OR51G1Q8NGK1 321 aa17.19■□□□□ 0.34
LSM4-202ENST00000593564 RNF125Q96EQ8 232 aa17.19■□□□□ 0.34
LSM4-202ENST00000593564 HLA-DRB4X5D2U9 266 aa17.19■□□□□ 0.34
LSM4-202ENST00000593564 OR51S1Q8NGJ8 323 aa17.18■□□□□ 0.34
LSM4-202ENST00000593564 HSPB7Q9UBY9 170 aa17.18■□□□□ 0.34
LSM4-202ENST00000593564 KCNIP3Q9Y2W7 256 aa17.18■□□□□ 0.34
LSM4-202ENST00000593564 CCR6P51684 374 aa17.17■□□□□ 0.34
LSM4-202ENST00000593564 OR8G2PQ6IF36 304 aa17.17■□□□□ 0.34
LSM4-202ENST00000593564 ZNF705AQ6ZN79 300 aaPredicted RBP17.17■□□□□ 0.34
LSM4-202ENST00000593564 LGI3Q8N145 548 aa17.17■□□□□ 0.34
LSM4-202ENST00000593564 DTD1Q8TEA8 209 aa17.17■□□□□ 0.34
LSM4-202ENST00000593564 NEU1Q99519 415 aa17.17■□□□□ 0.34
LSM4-202ENST00000593564 PRR13Q9NZ81 148 aa17.17■□□□□ 0.34
LSM4-202ENST00000593564 RABL2AQ9UBK7 228 aaPredicted RBP17.17■□□□□ 0.34
LSM4-202ENST00000593564 PFDN2Q9UHV9 154 aa17.17■□□□□ 0.34
LSM4-202ENST00000593564 RABL2BQ9UNT1 228 aa17.17■□□□□ 0.34
LSM4-202ENST00000593564 PKHD1P08F94 4074 aa17.16■□□□□ 0.34
LSM4-202ENST00000593564 KLF9Q13886 244 aaPredicted RBP17.16■□□□□ 0.34
LSM4-202ENST00000593564 SMCO1Q147U7 214 aa17.16■□□□□ 0.34
LSM4-202ENST00000593564 CLVS1Q8IUQ0 354 aaPredicted RBP17.16■□□□□ 0.34
LSM4-202ENST00000593564 NDUFAF3Q9BU61 184 aa17.16■□□□□ 0.34
LSM4-202ENST00000593564 DYNC1H1Q14204 4646 aaKnown RBP17.16■□□□□ 0.34
LSM4-202ENST00000593564 A0A0B4J2A0 478 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 ANKRD20A5PA0PJZ0 165 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 P0DMU3 169 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 FAM231AP0DMU4 169 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 FAM231CP0DMU5 169 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 IL18Q14116 193 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 SPCS2Q15005 226 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 POM121L12Q8N7R1 296 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 DIRAS2Q96HU8 199 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 SHPKQ9UHJ6 478 aa17.15■□□□□ 0.34
LSM4-202ENST00000593564 ZNF705FA8MVS1 300 aaPredicted RBP17.14■□□□□ 0.33
LSM4-202ENST00000593564 ZNF705DP0CH99 300 aaPredicted RBP17.14■□□□□ 0.33
LSM4-202ENST00000593564 ZNF705BP0CI00 300 aaPredicted RBP17.14■□□□□ 0.33
LSM4-202ENST00000593564 ATP5IP56385 69 aaPredicted RBP17.14■□□□□ 0.33
LSM4-202ENST00000593564 GDF5OSQ5U4N7 250 aa17.14■□□□□ 0.33
LSM4-202ENST00000593564 GPR141Q7Z602 305 aa17.14■□□□□ 0.33
LSM4-202ENST00000593564 SCGB3A2Q96PL1 93 aa17.14■□□□□ 0.33
LSM4-202ENST00000593564 PBDC1Q9BVG4 233 aa17.14■□□□□ 0.33
LSM4-202ENST00000593564 RBKSQ9H477 322 aa17.14■□□□□ 0.33
LSM4-202ENST00000593564 SCP2D1Q9UJQ7 156 aa17.14■□□□□ 0.33
LSM4-202ENST00000593564 DNAH11Q96DT5 4516 aa17.14■□□□□ 0.33
LSM4-202ENST00000593564 TMEM189A5PLL7 270 aa17.13■□□□□ 0.33
LSM4-202ENST00000593564 SMIM9A6NGZ8 99 aa17.13■□□□□ 0.33
LSM4-202ENST00000593564 GPX4P36969 197 aaPredicted RBP17.13■□□□□ 0.33
LSM4-202ENST00000593564 GAMTQ14353 236 aa17.13■□□□□ 0.33
LSM4-202ENST00000593564 LYZL2Q7Z4W2 148 aa17.13■□□□□ 0.33
LSM4-202ENST00000593564 SCRT1Q9BWW7 348 aa17.13■□□□□ 0.33
LSM4-202ENST00000593564 WDR12Q9GZL7 423 aaKnown RBP17.13■□□□□ 0.33
LSM4-202ENST00000593564 SAV1Q9H4B6 383 aaPredicted RBP17.13■□□□□ 0.33
LSM4-202ENST00000593564 IGKV1D-37A0A075B6S9 117 aa17.12■□□□□ 0.33
LSM4-202ENST00000593564 ZFP92A6NM28 416 aa17.12■□□□□ 0.33
LSM4-202ENST00000593564 SPART-AS1P0CW21 52 aa17.12■□□□□ 0.33
LSM4-202ENST00000593564 ID1P41134 155 aa17.12■□□□□ 0.33
LSM4-202ENST00000593564 ALDH3B2P48448 385 aa17.12■□□□□ 0.33
LSM4-202ENST00000593564 PSMB3P49720 205 aa17.12■□□□□ 0.33
LSM4-202ENST00000593564 SUPT4H1P63272 117 aaKnown RBP17.12■□□□□ 0.33
LSM4-202ENST00000593564 C1orf194Q5T5A4 169 aa17.12■□□□□ 0.33
LSM4-202ENST00000593564 FOXI2Q6ZQN5 318 aa17.12■□□□□ 0.33
LSM4-202ENST00000593564 CLUHP3Q96NS8 147 aa17.12■□□□□ 0.33
LSM4-202ENST00000593564 MRPS26Q9BYN8 205 aaKnown RBP17.12■□□□□ 0.33
LSM4-202ENST00000593564 SOCS3O14543 225 aa17.11■□□□□ 0.33
LSM4-202ENST00000593564 IGKV3-20P01619 116 aa17.11■□□□□ 0.33
LSM4-202ENST00000593564 DEFB1P60022 68 aa17.11■□□□□ 0.33
LSM4-202ENST00000593564 SRPXP78539 464 aa17.11■□□□□ 0.33
LSM4-202ENST00000593564 ZNF90Q03938 601 aa17.11■□□□□ 0.33
LSM4-202ENST00000593564 SLC35E1Q96K37 410 aa17.11■□□□□ 0.33
LSM4-202ENST00000593564 LINC00052Q96N35 136 aa17.11■□□□□ 0.33
LSM4-202ENST00000593564 CCDC59Q9P031 241 aaKnown RBP17.11■□□□□ 0.33
LSM4-202ENST00000593564 A0A1B0GVY2 172 aa17.1■□□□□ 0.33
LSM4-202ENST00000593564 FABP1P07148 127 aa17.1■□□□□ 0.33
LSM4-202ENST00000593564 ANXA3P12429 323 aa17.1■□□□□ 0.33
LSM4-202ENST00000593564 AKR1C4P17516 323 aa17.1■□□□□ 0.33
LSM4-202ENST00000593564 RFNGQ9Y644 331 aa17.1■□□□□ 0.33
LSM4-202ENST00000593564 EMP1P54849 157 aa17.09■□□□□ 0.33
LSM4-202ENST00000593564 FXYD7P58549 80 aa17.09■□□□□ 0.33
LSM4-202ENST00000593564 LYZP61626 148 aa17.09■□□□□ 0.33
LSM4-202ENST00000593564 ZNF709Q8N972 641 aa17.09■□□□□ 0.33
LSM4-202ENST00000593564 OR1S1Q8NH92 325 aa17.09■□□□□ 0.33
LSM4-202ENST00000593564 COQ8AQ8NI60 647 aa17.09■□□□□ 0.33
LSM4-202ENST00000593564 MCUBQ9NWR8 336 aa17.09■□□□□ 0.33
LSM4-202ENST00000593564 RSL24D1Q9UHA3 163 aaKnown RBP17.09■□□□□ 0.33
LSM4-202ENST00000593564 RYR1P21817 5038 aa17.08■□□□□ 0.33
LSM4-202ENST00000593564 IGHV3OR16-12A0A075B7B8 117 aa17.08■□□□□ 0.32
LSM4-202ENST00000593564 SPATA31B1PQ5VZV4 182 aa17.08■□□□□ 0.32
LSM4-202ENST00000593564 DYNC2LI1Q8TCX1 351 aa17.08■□□□□ 0.32
LSM4-202ENST00000593564 FAM210BQ96KR6 192 aa17.08■□□□□ 0.32
LSM4-202ENST00000593564 PIGBOS1A0A0B4J2F0 54 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms