RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 V9GYV3 84 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 HECTD4Q9Y4D8 3996 aa3.36□□□□□ -1.87
LIG3-211ENST00000588713 TRAV24A0A0B4J272 114 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 A0A1W2PPV4 95 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 SMIM27A0A1W2PRY6 76 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 A0A1W2PS18 150 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 ZNF716A6NP11 495 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 C15orf62A8K5M9 175 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 KRTAP9-7A8MTY7 169 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 F2Z2F3 143 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 LYNX1G3V0Z9 82 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 H0YJW9 148 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 K7EN84 100 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 K7ERU9 68 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 BMPR1BO00238 502 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 ISLRO14498 428 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 HMGB3O15347 200 aaKnown RBP3.35□□□□□ -1.87
LIG3-211ENST00000588713 OR2J3O76001 311 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 CA2P00918 260 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 ARL14EPLP0DKL9 152 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 LYNX1P0DP58 116 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 B4GALT1P15291 398 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 IGLL1P15814 213 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 NPY1RP25929 384 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 GCHFRP30047 84 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 IER3P46695 156 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 REG1BP48304 166 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 GNG4P50150 75 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 GPM6AP51674 278 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 CLDN18P56856 261 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 RAC3P60763 192 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 UBE2G1P62253 170 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 GNG3P63215 75 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 HTD2P86397 168 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 PSG7Q13046 419 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 KLF5Q13887 457 aaPredicted RBP3.35□□□□□ -1.87
LIG3-211ENST00000588713 PDCD1Q15116 288 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 RBMY1FQ15415 496 aaKnown RBP3.35□□□□□ -1.87
LIG3-211ENST00000588713 IZUMO4Q1ZYL8 232 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 OCIAD2Q56VL3 154 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 ETFRF1Q6IPR1 90 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 MRPL54Q6P161 138 aaKnown RBP3.35□□□□□ -1.87
LIG3-211ENST00000588713 UNQ5815/PRO19632Q6UWF5 114 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 LCNL1Q6ZST4 164 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 OR8I2Q8N0Y5 310 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 FAM58AQ8N1B3 248 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 LYG1Q8N1E2 194 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 C11orf44Q8N8P7 122 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 NUDT10Q8NFP7 164 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 OR4F17Q8NGA8 305 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 OR8B3Q8NGG8 313 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 OR1L1Q8NH94 360 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 SVIPQ8NHG7 77 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 OR8B2Q96RD0 313 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 GPHA2Q96T91 129 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 VPS25Q9BRG1 176 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 GGTLC1Q9BX51 225 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 LINC00470Q9BZP3 86 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 HES4Q9HCC6 221 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 SEPSECSQ9HD40 501 aaKnown RBP3.35□□□□□ -1.87
LIG3-211ENST00000588713 TMEM167BQ9NRX6 74 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 MTCH1Q9NZJ7 389 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 NAT8BQ9UHF3 227 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 MPC1Q9Y5U8 109 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 DNAH7Q8WXX0 4024 aa3.35□□□□□ -1.87
LIG3-211ENST00000588713 PLECQ15149 4684 aaKnown RBP3.35□□□□□ -1.87
LIG3-211ENST00000588713 IGHV3-15A0A0B4J1V0 119 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 TRAV38-1A0A0B4J264 116 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 TRAV34A0A0B4J273 112 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 TMEM30CPA0ZSE6 113 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 IZUMO1RA6ND01 250 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 PGPEP1LA6NFU8 196 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 PRSS46E5RG02 174 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 HSPB6O14558 160 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 WNT9BO14905 357 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 HOXA3O43365 443 aaPredicted RBP3.34□□□□□ -1.87
LIG3-211ENST00000588713 HSBP1O75506 76 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 NDUFA7O95182 113 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 LINC00869P0C866 280 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 SRIP30626 198 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 CEACAM3P40198 252 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 HINT1P49773 126 aaPredicted RBP3.34□□□□□ -1.87
LIG3-211ENST00000588713 ZNF83P51522 516 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 PROK1P58294 105 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 SELENOVP59797 346 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 KRTAP10-11P60412 298 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 RPL31P62899 125 aaKnown RBP3.34□□□□□ -1.87
LIG3-211ENST00000588713 CEACAM16Q2WEN9 425 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 CENPWQ5EE01 88 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 LDLRAD2Q5SZI1 272 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 TRAT1Q6PIZ9 186 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 FAM231DQ6ZW35 169 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 AAED1Q7RTV5 226 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 ATP5L2Q7Z4Y8 100 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 GGNQ86UU5 652 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 FGFRL1Q8N441 504 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 DEFB125Q8N687 156 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 SCCPDHQ8NBX0 429 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 OR52E5Q8NH55 327 aa3.34□□□□□ -1.87
LIG3-211ENST00000588713 LINC01006Q8NI28 216 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms