RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 WFDC5Q8TCV5 224 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 C2orf50Q96LR7 162 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 TAS2R7Q9NYW3 318 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 ORMDL1Q9P0S3 153 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 TNFSF18Q9UNG2 199 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 CHCHD2Q9Y6H1 151 aaPredicted RBP0.21□□□□□ -2.38
SS18-214ENST00000580003 A0A0D9SG42 100 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 M0R036 132 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 GADD45GO95257 159 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 TTRP02766 147 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 IFNA16P05015 189 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 COTL1Q14019 142 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 OR6V1Q8N148 313 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 GDPD1Q8N9F7 314 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 OR2T35Q8NGX2 323 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 GPER1Q99527 375 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 CMSS1Q9BQ75 279 aaKnown RBP0.2□□□□□ -2.38
SS18-214ENST00000580003 TNS3Q68CZ2 1445 aa0.2□□□□□ -2.38
SS18-214ENST00000580003 ROBO3Q96MS0 1386 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 KIAA1549Q9HCM3 1950 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 NAV2Q8IVL1 2488 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 FAM236DA0A1B0GTK5 79 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 AHSA1O95433 338 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 FAM236CP0DP71 79 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 EXOC3-AS1Q8N2X6 119 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 SLAMF6Q96DU3 332 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 ADAT3Q96EY9 351 aaPredicted RBP0.19□□□□□ -2.38
SS18-214ENST00000580003 C8orf76Q96K31 380 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 LINC00467Q9BRT7 94 aa0.19□□□□□ -2.38
SS18-214ENST00000580003 ASCC3Q8N3C0 2202 aaKnown RBP0.18□□□□□ -2.38
SS18-214ENST00000580003 SERPINA6P08185 405 aa0.18□□□□□ -2.38
SS18-214ENST00000580003 HOXA6P31267 233 aa0.18□□□□□ -2.38
SS18-214ENST00000580003 TP53RKQ96S44 253 aa0.18□□□□□ -2.38
SS18-214ENST00000580003 FAT4Q6V0I7 4981 aa0.18□□□□□ -2.38
SS18-214ENST00000580003 ZNF106Q9H2Y7 1883 aaKnown RBP0.18□□□□□ -2.38
SS18-214ENST00000580003 SMIM23A6NLE4 172 aa0.17□□□□□ -2.38
SS18-214ENST00000580003 HAGHLQ6PII5 290 aaPredicted RBP0.17□□□□□ -2.38
SS18-214ENST00000580003 SLC30A7Q8NEW0 376 aa0.17□□□□□ -2.38
SS18-214ENST00000580003 OR10AC1Q8NH08 325 aa0.17□□□□□ -2.38
SS18-214ENST00000580003 CT55Q8WUE5 264 aa0.17□□□□□ -2.38
SS18-214ENST00000580003 BORCS7Q96B45 105 aa0.17□□□□□ -2.38
SS18-214ENST00000580003 RNF122Q9H9V4 155 aa0.17□□□□□ -2.38
SS18-214ENST00000580003 CLDN24A6NM45 220 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 M0R378 163 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 KRTAP2-3P0C7H8 128 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 SPINK7P58062 85 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 CLDN22Q8N7P3 220 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 ZNF431Q8TF32 576 aaPredicted RBP0.16□□□□□ -2.38
SS18-214ENST00000580003 DDI1Q8WTU0 396 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 FAM172AQ8WUF8 416 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 LINC00052Q96N35 136 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 PRADC1Q9BSG0 188 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 KRTAP2-4Q9BYR9 128 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 KRTAP2-1Q9BYU5 128 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 FBXO5Q9UKT4 447 aa0.16□□□□□ -2.38
SS18-214ENST00000580003 CYB5BO43169 146 aa0.15□□□□□ -2.39
SS18-214ENST00000580003 PPIBP23284 216 aaKnown RBP0.15□□□□□ -2.39
SS18-214ENST00000580003 DYNLT1P63172 113 aa0.15□□□□□ -2.39
SS18-214ENST00000580003 Q6ZS92 163 aa0.15□□□□□ -2.39
SS18-214ENST00000580003 CANT1Q8WVQ1 401 aa0.15□□□□□ -2.39
SS18-214ENST00000580003 MED29Q9NX70 200 aa0.15□□□□□ -2.39
SS18-214ENST00000580003 NOSIPQ9Y314 301 aaKnown RBP0.15□□□□□ -2.39
SS18-214ENST00000580003 SSPOA2VEC9 5147 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 hCG_1818297A0A087WSY0 165 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 A8MT66 165 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 CNIH1O95406 144 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 SERPINE1P05121 402 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 SMIM17P0DL12 118 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 C12orf74Q32Q52 190 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 Q8IYB0 196 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 C12orf45Q8N5I9 185 aaPredicted RBP0.14□□□□□ -2.39
SS18-214ENST00000580003 TSKUQ8WUA8 353 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 PSMF1Q92530 271 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 PSTPIP2Q9H939 334 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 CACNA1EQ15878 2313 aa0.14□□□□□ -2.39
SS18-214ENST00000580003 FXYD6P3P58550 94 aa0.13□□□□□ -2.39
SS18-214ENST00000580003 EIF5AP63241 154 aaKnown RBP0.13□□□□□ -2.39
SS18-214ENST00000580003 IAH1Q2TAA2 248 aaPredicted RBP0.13□□□□□ -2.39
SS18-214ENST00000580003 TEN1Q86WV5 123 aa0.13□□□□□ -2.39
SS18-214ENST00000580003 OR52L1Q8NGH7 329 aa0.13□□□□□ -2.39
SS18-214ENST00000580003 TVP23BQ9NYZ1 205 aa0.13□□□□□ -2.39
SS18-214ENST00000580003 PLXND1Q9Y4D7 1925 aa0.13□□□□□ -2.39
SS18-214ENST00000580003 SYNE1Q8NF91 8797 aaKnown RBP0.12□□□□□ -2.39
SS18-214ENST00000580003 hADV38S2A0JD32 116 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 TIMM17BO60830 172 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 OMPP47874 163 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 LYRM7Q5U5X0 104 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 C4orf22Q6V702 233 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 ATOH7Q8N100 152 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 LYSMD1Q96S90 227 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 JPT1Q9UK76 154 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 RIMBP3CA6NJZ7 1639 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 RIMBP3BA6NNM3 1639 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 RIMBP3Q9UFD9 1639 aa0.12□□□□□ -2.39
SS18-214ENST00000580003 CITO14578 2027 aa0.11□□□□□ -2.39
SS18-214ENST00000580003 MAST4O15021 2626 aa0.11□□□□□ -2.39
SS18-214ENST00000580003 RTL1A6NKG5 1358 aa0.11□□□□□ -2.39
SS18-214ENST00000580003 TRGV10A0A0A0MS01 117 aa0.11□□□□□ -2.39
SS18-214ENST00000580003 H3BRM9 83 aa0.11□□□□□ -2.39
SS18-214ENST00000580003 SRP14P37108 136 aaKnown RBP0.11□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms