RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 PPP5D1E7EU14 171 aa12.42□□□□□ -0.42
SS18-211ENST00000578954 GGCTO75223 188 aaKnown RBP12.42□□□□□ -0.42
SS18-211ENST00000578954 RD3LP0DJH9 198 aa12.42□□□□□ -0.42
SS18-211ENST00000578954 GATA2P23769 480 aaPredicted RBP12.42□□□□□ -0.42
SS18-211ENST00000578954 RELQ04864 619 aaPredicted RBP12.42□□□□□ -0.42
SS18-211ENST00000578954 ZNF616Q08AN1 781 aa12.42□□□□□ -0.42
SS18-211ENST00000578954 FFAR4Q5NUL3 377 aa12.42□□□□□ -0.42
SS18-211ENST00000578954 PXDC1Q5TGL8 231 aa12.42□□□□□ -0.42
SS18-211ENST00000578954 OR51G1Q8NGK1 321 aa12.42□□□□□ -0.42
SS18-211ENST00000578954 CITED2Q99967 270 aaPredicted RBP12.42□□□□□ -0.42
SS18-211ENST00000578954 WI2-2373I1.2A0A1W2PRP0 233 aa12.41□□□□□ -0.42
SS18-211ENST00000578954 ANKRD34BA5PLL1 514 aa12.41□□□□□ -0.42
SS18-211ENST00000578954 IFNA7P01567 189 aa12.41□□□□□ -0.42
SS18-211ENST00000578954 MBP02144 154 aa12.41□□□□□ -0.42
SS18-211ENST00000578954 HSPB1P04792 205 aaKnown RBP12.41□□□□□ -0.42
SS18-211ENST00000578954 SULT1A2P50226 295 aa12.41□□□□□ -0.42
SS18-211ENST00000578954 ALKAL2Q6UX46 152 aa12.41□□□□□ -0.42
SS18-211ENST00000578954 C18orf65Q6ZTR6 163 aa12.41□□□□□ -0.42
SS18-211ENST00000578954 Q8WTZ3 238 aa12.41□□□□□ -0.42
SS18-211ENST00000578954 OR5B12Q96R08 314 aa12.41□□□□□ -0.42
SS18-211ENST00000578954 ADARB2-AS1A8MUL3 147 aa12.4□□□□□ -0.42
SS18-211ENST00000578954 NDUFA4O00483 81 aa12.4□□□□□ -0.42
SS18-211ENST00000578954 M6PRP20645 277 aa12.4□□□□□ -0.42
SS18-211ENST00000578954 RAB5CP51148 216 aa12.4□□□□□ -0.42
SS18-211ENST00000578954 Q6ZRG5 221 aa12.4□□□□□ -0.42
SS18-211ENST00000578954 KLHL30-AS1Q8NEE0 82 aa12.4□□□□□ -0.42
SS18-211ENST00000578954 C19orf24Q9BVV8 132 aa12.4□□□□□ -0.42
SS18-211ENST00000578954 ZFAND3Q9H8U3 227 aa12.4□□□□□ -0.42
SS18-211ENST00000578954 PUS1Q9Y606 427 aaKnown RBP eCLIP12.4□□□□□ -0.42
SS18-211ENST00000578954 IGHV4OR15-8A0A075B7B6 117 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 A0A087WW49 117 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 RGS13O14921 159 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 ELLP55199 621 aaPredicted RBP12.39□□□□□ -0.43
SS18-211ENST00000578954 FHL3Q13643 280 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 ACOT6Q3I5F7 207 aaPredicted RBP12.39□□□□□ -0.43
SS18-211ENST00000578954 TMEM41BQ5BJD5 291 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 KHDC1LQ5JSQ8 128 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 AKR1C8PQ5T2L2 129 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 TOMM20LQ6UXN7 152 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 DPPA3Q6W0C5 159 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 ZNF767PQ75MW2 155 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 NDUFA11Q86Y39 141 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 GPHB5Q86YW7 130 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 C11orf44Q8N8P7 122 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 GATAD1Q8WUU5 269 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 RNF125Q96EQ8 232 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 CITED1Q99966 193 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 VSIRQ9H7M9 311 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 RPRMQ9NS64 109 aa12.39□□□□□ -0.43
SS18-211ENST00000578954 ELOA3CA0A087WX78 387 aaPredicted RBP12.38□□□□□ -0.43
SS18-211ENST00000578954 SEC14L6B5MCN3 397 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 IL4P05112 153 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 RAB2AP61019 212 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 GCSAMLQ5JQS6 135 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 FAM74A1Q5RGS3 127 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 PATE2Q6UY27 113 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 OR1L4Q8NGR5 311 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 TMEM37Q8WXS4 190 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 TMEM190Q8WZ59 177 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 PFDN5Q99471 154 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 MRPL27Q9P0M9 148 aaKnown RBP12.38□□□□□ -0.43
SS18-211ENST00000578954 UBQLN2Q9UHD9 624 aa12.38□□□□□ -0.43
SS18-211ENST00000578954 NUDT19A8MXV4 375 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 LINC01619G3V211 115 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 HYPMO75409 117 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 OR5G3P0C626 314 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 ZP3P21754 424 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 LYZP61626 148 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 USF2Q15853 346 aaPredicted RBP12.37□□□□□ -0.43
SS18-211ENST00000578954 C8orf86Q6ZUL3 223 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 LURAP1LQ8IV03 231 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 RPP25LQ8N5L8 163 aaKnown RBP12.37□□□□□ -0.43
SS18-211ENST00000578954 RNF141Q8WVD5 230 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 TMEM158Q8WZ71 300 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 RCC1LQ96I51 464 aaKnown RBP12.37□□□□□ -0.43
SS18-211ENST00000578954 RNF2Q99496 336 aa12.37□□□□□ -0.43
SS18-211ENST00000578954 IGHV3-35A0A0C4DH35 117 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 COX7A2P2O60397 106 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 RPEL1Q2QD12 228 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 DEFB136Q30KP8 78 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 HIST2H2BDQ6DRA6 164 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 REC114Q7Z4M0 266 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 OR11H1Q8NG94 326 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 OR10G4Q8NGN3 311 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 OR10G9Q8NGN4 311 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 OR10G7Q8NGN6 311 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 OR1N2Q8NGR9 330 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 LRRC20Q8TCA0 184 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 MRPL32Q9BYC8 188 aaKnown RBP12.36□□□□□ -0.43
SS18-211ENST00000578954 DNAJC4Q9NNZ3 241 aa12.36□□□□□ -0.43
SS18-211ENST00000578954 A8MWP6 167 aa12.35□□□□□ -0.43
SS18-211ENST00000578954 LGALS9O00182 355 aa12.35□□□□□ -0.43
SS18-211ENST00000578954 ORM2P19652 201 aa12.35□□□□□ -0.43
SS18-211ENST00000578954 HOXD3P31249 432 aaPredicted RBP12.35□□□□□ -0.43
SS18-211ENST00000578954 KLF5Q13887 457 aaPredicted RBP12.35□□□□□ -0.43
SS18-211ENST00000578954 ZNF726P1Q15940 193 aa12.35□□□□□ -0.43
SS18-211ENST00000578954 FAM106AQ4KMX7 169 aa12.35□□□□□ -0.43
SS18-211ENST00000578954 C10orf113Q5VZT2 155 aa12.35□□□□□ -0.43
SS18-211ENST00000578954 UNQ9165/PRO28630Q6UXU0 137 aa12.35□□□□□ -0.43
SS18-211ENST00000578954 OR1B1Q8NGR6 318 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms