RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 RNF125Q96EQ8 232 aa7.22□□□□□ -1.25
CCDC40-214ENST00000575431 SPAG8Q99932 426 aaPredicted RBP7.22□□□□□ -1.25
CCDC40-214ENST00000575431 VSIRQ9H7M9 311 aa7.22□□□□□ -1.25
CCDC40-214ENST00000575431 IGKV1D-37A0A075B6S9 117 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 IGKV1OR2-108A0A075B7D4 117 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 IGHV3OR16-8A0A075B7F1 116 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 WI2-2373I1.2A0A1W2PRP0 233 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 SMCO3A2RU48 225 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 ZNF785A8K8V0 405 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 K7EIL1 84 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 ZNF207O43670 478 aaKnown RBP7.21□□□□□ -1.26
CCDC40-214ENST00000575431 IL4P05112 153 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 HNRNPCP07910 306 aaKnown RBP eCLIP7.21□□□□□ -1.26
CCDC40-214ENST00000575431 EDN2P20800 178 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 AP2S1P53680 142 aaPredicted RBP7.21□□□□□ -1.26
CCDC40-214ENST00000575431 RRAS2P62070 204 aaPredicted RBP7.21□□□□□ -1.26
CCDC40-214ENST00000575431 PAFAH1B2P68402 229 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 ZNF90Q03938 601 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 SLC38A11Q08AI6 406 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 GUCA2BQ16661 112 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 LRRC37A5PQ49AS3 106 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 DEFB121Q5J5C9 76 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 HAPLN4Q86UW8 402 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 BPIFCQ8NFQ6 507 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 THAP6Q8TBB0 222 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 PRR25Q96S07 402 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 RABAC1Q9UI14 185 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 SLC45A2Q9UMX9 530 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 RNF24Q9Y225 148 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 LSM4Q9Y4Z0 139 aaKnown RBP7.21□□□□□ -1.26
CCDC40-214ENST00000575431 SMAD5-AS1Q9Y6J3 95 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 NOTCH3Q9UM47 2321 aa7.21□□□□□ -1.26
CCDC40-214ENST00000575431 IZUMO1RA6ND01 250 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 HELTA6NFD8 242 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 OR4C46A6NHA9 309 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 MPDU1O75352 247 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 CCNKO75909 580 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 CST7O76096 145 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 PRB2P02812 416 aaPredicted RBP7.2□□□□□ -1.26
CCDC40-214ENST00000575431 GIPP09681 153 aaPredicted RBP7.2□□□□□ -1.26
CCDC40-214ENST00000575431 CXCL3P19876 107 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 ARL16Q0P5N6 197 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 FCN2Q15485 313 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 VWC2Q2TAL6 325 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 PXDC1Q5TGL8 231 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 CYP2G1PQ6ZSU1 146 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 LILRB2Q8N423 598 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 TMEM217Q8N7C4 229 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 OR11H7Q8NGC8 314 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 RNF2Q99496 336 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 RNF126Q9BV68 326 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 TMEM147Q9BVK8 224 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 UQCC1Q9NVA1 299 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 U3KQE9 123 aa7.2□□□□□ -1.26
CCDC40-214ENST00000575431 VWFP04275 2813 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 TRAV2A0A0B4J234 112 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 IGSF23A1L1A6 192 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 A8MZ25 164 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 H0YIZ8 118 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 BUB3O43684 328 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 LYL1P12980 280 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 PLP1P60201 277 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 RAP2BP61225 183 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 EWSR1Q01844 656 aaKnown RBP eCLIP7.19□□□□□ -1.26
CCDC40-214ENST00000575431 OR2F1Q13607 317 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 USF2Q15853 346 aaPredicted RBP7.19□□□□□ -1.26
CCDC40-214ENST00000575431 C1orf194Q5T5A4 169 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 FAM90A2PQ658T7 463 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 TCF24Q7RTU0 167 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 ZNF546Q86UE3 836 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 Q8N1Y9 231 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 ST8SIA2Q92186 375 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 WDR89Q96FK6 387 aaPredicted RBP7.19□□□□□ -1.26
CCDC40-214ENST00000575431 FAM110AQ9BQ89 295 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 PBDC1Q9BVG4 233 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 OR5AC2Q9NZP5 309 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 FBXL17Q9UF56 701 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 WDR83OSQ9Y284 106 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 FBN3Q75N90 2809 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 TRRAPQ9Y4A5 3859 aa7.19□□□□□ -1.26
CCDC40-214ENST00000575431 PKD1L1Q8TDX9 2849 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 IGHV3OR16-13A0A075B7E8 117 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 IGHV3-49A0A0A0MS15 119 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 IGHV3-74A0A0B4J1X5 117 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 AGPAT2O15120 278 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 DFFBO76075 338 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 APOHP02749 345 aaPredicted RBP7.18□□□□□ -1.26
CCDC40-214ENST00000575431 RPL12P30050 165 aaKnown RBP7.18□□□□□ -1.26
CCDC40-214ENST00000575431 CD81P60033 236 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 LYZP61626 148 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 RPL11P62913 178 aaKnown RBP7.18□□□□□ -1.26
CCDC40-214ENST00000575431 C16orf54Q6UWD8 224 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 Q6ZRG5 221 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 CHAC2Q8WUX2 184 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 NEURL2Q9BR09 285 aa7.18□□□□□ -1.26
CCDC40-214ENST00000575431 SORL1Q92673 2214 aa7.17□□□□□ -1.26
CCDC40-214ENST00000575431 ELOA3CA0A087WX78 387 aaPredicted RBP7.17□□□□□ -1.26
CCDC40-214ENST00000575431 DNASE2O00115 360 aaPredicted RBP7.17□□□□□ -1.26
CCDC40-214ENST00000575431 HYPMO75409 117 aa7.17□□□□□ -1.26
CCDC40-214ENST00000575431 LINC00869P0C866 280 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms