RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TRAV5A0A0B4J249 113 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 EFCAB10A6NFE3 127 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 PPYP01298 95 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 RLN2P04090 185 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 UCP1P25874 307 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 RANBP1P43487 201 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 MLANAQ16655 118 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 LINC01620Q4KN68 170 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 PAXXQ9BUH6 204 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 DAPK2Q9UIK4 370 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 ICOSQ9Y6W8 199 aa10.64□□□□□ -0.71
VPS53-218ENST00000575207 A0A0B4J293 547 aa10.63□□□□□ -0.71
VPS53-218ENST00000575207 CRYGDP07320 174 aa10.63□□□□□ -0.71
VPS53-218ENST00000575207 CNN1P51911 297 aaKnown RBP10.63□□□□□ -0.71
VPS53-218ENST00000575207 WNT4P56705 351 aa10.63□□□□□ -0.71
VPS53-218ENST00000575207 ARL6IP1Q15041 203 aa10.63□□□□□ -0.71
VPS53-218ENST00000575207 HACD4Q5VWC8 232 aa10.63□□□□□ -0.71
VPS53-218ENST00000575207 WFDC10BQ8IUB3 73 aa10.63□□□□□ -0.71
VPS53-218ENST00000575207 OR4A16Q8NH70 328 aa10.63□□□□□ -0.71
VPS53-218ENST00000575207 LOC100130705A0A1B0GUX0 176 aa10.62□□□□□ -0.71
VPS53-218ENST00000575207 IGLC1P0CG04 106 aa10.62□□□□□ -0.71
VPS53-218ENST00000575207 FXYD4P59646 89 aa10.62□□□□□ -0.71
VPS53-218ENST00000575207 YPEL3P61236 119 aaPredicted RBP10.62□□□□□ -0.71
VPS53-218ENST00000575207 HSPE1P61604 102 aaKnown RBP10.62□□□□□ -0.71
VPS53-218ENST00000575207 OR1S2Q8NGQ3 325 aa10.62□□□□□ -0.71
VPS53-218ENST00000575207 OR6F1Q8NGZ6 308 aa10.62□□□□□ -0.71
VPS53-218ENST00000575207 GYG2O15488 501 aa10.61□□□□□ -0.71
VPS53-218ENST00000575207 RLN1P04808 185 aa10.61□□□□□ -0.71
VPS53-218ENST00000575207 CALRP27797 417 aaKnown RBP10.61□□□□□ -0.71
VPS53-218ENST00000575207 NUP62P37198 522 aaPredicted RBP10.61□□□□□ -0.71
VPS53-218ENST00000575207 SUB1P53999 127 aaKnown RBP eCLIP10.61□□□□□ -0.71
VPS53-218ENST00000575207 WFDC2Q14508 124 aa10.61□□□□□ -0.71
VPS53-218ENST00000575207 DNAL1Q4LDG9 190 aa10.61□□□□□ -0.71
VPS53-218ENST00000575207 SPINK9Q5DT21 86 aa10.61□□□□□ -0.71
VPS53-218ENST00000575207 NUDCD2Q8WVJ2 157 aa10.61□□□□□ -0.71
VPS53-218ENST00000575207 C20orf173Q96LM9 149 aa10.61□□□□□ -0.71
VPS53-218ENST00000575207 CACNG5Q9UF02 275 aa10.61□□□□□ -0.71
VPS53-218ENST00000575207 METTL21EPA6NDL7 271 aa10.6□□□□□ -0.71
VPS53-218ENST00000575207 MYL12BO14950 172 aa10.6□□□□□ -0.71
VPS53-218ENST00000575207 DUSP14O95147 198 aaKnown RBP10.6□□□□□ -0.71
VPS53-218ENST00000575207 TDRG1Q3Y452 100 aa10.6□□□□□ -0.71
VPS53-218ENST00000575207 CDNFQ49AH0 187 aa10.6□□□□□ -0.71
VPS53-218ENST00000575207 HES5Q5TA89 166 aa10.6□□□□□ -0.71
VPS53-218ENST00000575207 SAMD13Q5VXD3 122 aa10.6□□□□□ -0.71
VPS53-218ENST00000575207 TMEM17Q86X19 198 aa10.6□□□□□ -0.71
VPS53-218ENST00000575207 RNASE2P10153 161 aaKnown RBP10.59□□□□□ -0.71
VPS53-218ENST00000575207 PTHLHP12272 177 aa10.59□□□□□ -0.71
VPS53-218ENST00000575207 RAB6AP20340 208 aa10.59□□□□□ -0.71
VPS53-218ENST00000575207 OR10J1P30954 320 aa10.59□□□□□ -0.71
VPS53-218ENST00000575207 RPL5P46777 297 aaKnown RBP10.59□□□□□ -0.71
VPS53-218ENST00000575207 LINC01600Q96MT4 127 aa10.59□□□□□ -0.71
VPS53-218ENST00000575207 BOLA2-SMG1P6H3BVE0 249 aa10.58□□□□□ -0.72
VPS53-218ENST00000575207 BORCS5Q969J3 196 aa10.58□□□□□ -0.72
VPS53-218ENST00000575207 SLC25A39Q9BZJ4 359 aaPredicted RBP10.58□□□□□ -0.72
VPS53-218ENST00000575207 PFDN2Q9UHV9 154 aa10.58□□□□□ -0.72
VPS53-218ENST00000575207 RCL1Q9Y2P8 373 aaKnown RBP10.58□□□□□ -0.72
VPS53-218ENST00000575207 V9GY05 133 aa10.58□□□□□ -0.72
VPS53-218ENST00000575207 INS-IGF2F8WCM5 200 aa10.57□□□□□ -0.72
VPS53-218ENST00000575207 PAX4O43316 350 aa10.57□□□□□ -0.72
VPS53-218ENST00000575207 PGLYRP1O75594 196 aaPredicted RBP10.57□□□□□ -0.72
VPS53-218ENST00000575207 HSPA13P48723 471 aa10.57□□□□□ -0.72
VPS53-218ENST00000575207 H2BFWTQ7Z2G1 175 aa10.57□□□□□ -0.72
VPS53-218ENST00000575207 C16orf92Q96LL3 132 aa10.57□□□□□ -0.72
VPS53-218ENST00000575207 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.56□□□□□ -0.72
VPS53-218ENST00000575207 SNURFLB1AK76 121 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 ZNF324O75467 553 aaPredicted RBP10.56□□□□□ -0.72
VPS53-218ENST00000575207 FCER2P06734 321 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 RD3LP0DJH9 198 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 ZNF182P17025 639 aaPredicted RBP10.56□□□□□ -0.72
VPS53-218ENST00000575207 PSMB9P28065 219 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 RND2P52198 227 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 GNG2P59768 71 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 RPS25P62851 125 aaKnown RBP10.56□□□□□ -0.72
VPS53-218ENST00000575207 CD300CQ08708 224 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 GAMTQ14353 236 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 SLC35G3Q8N808 338 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 OR51G1Q8NGK1 321 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 ATG5Q9H1Y0 275 aa10.56□□□□□ -0.72
VPS53-218ENST00000575207 TMEM235A6NFC5 223 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 IBA57-AS1B1ANH7 110 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 SSX5O60225 188 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 TOMM40O96008 361 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 OR10A3P58181 314 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 Q6ZTI0 123 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 NEGR1Q7Z3B1 354 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 TMEM37Q8WXS4 190 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 SEC22AQ96IW7 307 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 DPH3P1Q9H4G8 78 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 Q9HAA7 133 aa10.55□□□□□ -0.72
VPS53-218ENST00000575207 TRGV2A0A075B6R0 118 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 H7BYZ3 331 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 ARL6IP5O75915 188 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 MEOX2P50222 304 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 SUPT4H1P63272 117 aaKnown RBP10.54□□□□□ -0.72
VPS53-218ENST00000575207 MRPL23Q16540 153 aaKnown RBP10.54□□□□□ -0.72
VPS53-218ENST00000575207 C1orf194Q5T5A4 169 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 PRSS54Q6PEW0 395 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 CCDC28AQ8IWP9 274 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 NANOGP1Q8N7R0 232 aa10.54□□□□□ -0.72
VPS53-218ENST00000575207 SLC24A4Q8NFF2 622 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms